View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15922_low_5 (Length: 431)
Name: NF15922_low_5
Description: NF15922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15922_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 152 - 416
Target Start/End: Complemental strand, 24682094 - 24681831
Alignment:
| Q |
152 |
ttagaatcgattcactgaatccagttagagcttgcttgtaatacaagtaattactcttaaacatgaaatatatcacaacaatattgtgcaaggacatgcc |
251 |
Q |
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| T |
24682094 |
ttagaatcgaatcactgaatccatttagagcttgcttgtaatacaagtaattactcttaaacatgaaatatatcacaacaatattgtgcaaggacatgcc |
24681995 |
T |
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| Q |
252 |
ttatgcagatgtaattggtcagttttctagttttgagcttattgccttttccattaatccatgcaagaataaggttgcttttagcagttttaactaattt |
351 |
Q |
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| T |
24681994 |
ttatgcagatgtaattggtca-ttttctagttttgagcttattgccttttccattaatccatgcaagaataaggttgcttttagcagttttaactaattt |
24681896 |
T |
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| Q |
352 |
aacttataaggaacatttcctatgtataggttaaatattgattaagaaacgtacacagtcatatt |
416 |
Q |
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| T |
24681895 |
aacttataaggaacatttcctatgtataggttaaatattgattgagaaacgtacacagtcatatt |
24681831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 24682245 - 24682164
Alignment:
| Q |
1 |
tcaattagcgtatgaggaatataaattttcataacaaacgagtgaatacaaaaagttgatatgataggatttacttatatag |
82 |
Q |
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| T |
24682245 |
tcaattagcgtatgaggaatataaattttcataacaaacgagtgaatacaaaaagttgatatgataggatttacttatatag |
24682164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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