View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15922_low_6 (Length: 391)
Name: NF15922_low_6
Description: NF15922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15922_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 6037061 - 6037435
Alignment:
| Q |
1 |
cttctgctacttcatcatcgaattcgatgccaatactcgattccagagaacgaaactggctggatcttccacgagatgcagtcttatccattttccagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037061 |
cttctgctacttcatcatcgaattcgatgccaatactcgattcgagagaacgaaactggctggatcttccacgagatgcagtcttatccattttccagaa |
6037160 |
T |
|
| Q |
101 |
gcttcccaccattgatattcttattcgcactcccagggtttgcactacgtggcgcaaaatctccaaagaccctttcctctatcgtaccatcgacatgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037161 |
gcttcccaccattgatattcttattcgcactcccagggtttgcactacgtggcgcaaaatctccaaagaccctttcctctatcgtaccatcgacatgttt |
6037260 |
T |
|
| Q |
201 |
gatcttggccacatcaggtatttagagcgtttatttcatcgcgccattgattacagctgcggccaaataatccatatcaacatcaactatttttgtacca |
300 |
Q |
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| T |
6037261 |
gatcttggctacatcaggtatttagagtgtttatgtcatcgcgccattgattacagctgcggccaaataatccatatcaacatcaactatttttgtacca |
6037360 |
T |
|
| Q |
301 |
atgatcttctccgccacatcgctgataagtatgttccactttcttctgctctttcgtttgatatttcacaaatgt |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037361 |
atgatcttctccgccacatcgctgataagtatgttccactttcttctgctctttcgtttgatatttcacaaatgt |
6037435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 6052069 - 6052241
Alignment:
| Q |
18 |
tcgaattcgatgccaatactcgattccagagaacgaaactggctggatcttccacgagatgcagtcttatccattttccagaagcttcccaccattgata |
117 |
Q |
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|||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | || ||| |
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| T |
6052069 |
tcgaattcgaaatcaataatcgattctggagaacgaaactggctggatcttccacgagatgcagtcttatccattttccggaagctcgacgcaatcgatc |
6052168 |
T |
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| Q |
118 |
ttcttattcgcactcccagggtttgcactacgtggcgcaaaatctccaaagaccctttcctctatcgtaccat |
190 |
Q |
| |
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|||| ||||| ||| || |||||||| || |||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
6052169 |
ttctcgttcgcgctcacaatgtttgcaccacatggcgcaaaatctccaaagacccttttctctttcgcaccat |
6052241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 6045386 - 6045565
Alignment:
| Q |
18 |
tcgaattcgatgccaatactcgattccagagaacgaaactggctggatcttccacgagatgcagtcttatccattttccagaagcttcccaccattgata |
117 |
Q |
| |
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|||||||||| |||||| ||||||| |||| ||||||||| ||||||||||| ||||| || ||| ||||||||| ||| |||| ||| || ||| |
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| T |
6045386 |
tcgaattcgaaaccaataatcgattctggagagcgaaactggttggatcttccatcagatgtcgtattaaccattttccggaaacttcacacgatcgatc |
6045485 |
T |
|
| Q |
118 |
ttcttattcgcactcccagggtttgcactacgtggcgcaaaatctccaaagaccctttcctctatcgtaccatcgacatg |
197 |
Q |
| |
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|||| |||| ||| | |||||||| || |||||||||||||| || || ||||||||||||| |||||||||||| |
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| T |
6045486 |
ttctccatcgcgctcataacgtttgcaccacatggcgcaaaatctcaaaggatcctttcctctatcacaccatcgacatg |
6045565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 6133806 - 6133655
Alignment:
| Q |
46 |
gagaacgaaactggctggatcttccacgagatgcagtcttatccattttccagaagcttcccaccattgatattcttattcgcactcccagggtttgcac |
145 |
Q |
| |
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|||||||||||||| | ||||||||||||||| |||| ||||||||||||| ||||||| | | || |||||||| |||||| || || |||||||| |
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| T |
6133806 |
gagaacgaaactgggtagatcttccacgagattcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcac |
6133707 |
T |
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| Q |
146 |
tacgtggcgcaaaatctccaaagaccctttcctctatcgtaccatcgacatg |
197 |
Q |
| |
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| T |
6133706 |
catatggcgcgaaatctcaaaggaccattccctctatcgcactatcaacatg |
6133655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 6045599 - 6045725
Alignment:
| Q |
219 |
tatttagagcgtttatttcatcgcgccattgattacagctgcggccaaataatccatatcaacatcaactatttttgtaccaatgatcttctccgccaca |
318 |
Q |
| |
|
||||||||| ||||| || |||||| |||||||||||| ||||||| || | ||||||| ||| | |||||| ||||| ||||||||||||| || | |
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| T |
6045599 |
tatttagagattttatgccaacgcgccgttgattacagctccggccaagcaaccgatatcaatatcgagtattttggtaccgatgatcttctccgtcata |
6045698 |
T |
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| Q |
319 |
tcgctgataagtatgttccactttctt |
345 |
Q |
| |
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|||||||| ||| ||||||||||||| |
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| T |
6045699 |
tcgctgattcgtaagttccactttctt |
6045725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 6040771 - 6040934
Alignment:
| Q |
34 |
tactcgattccagagaacgaaactggctggatcttccacgagatgcagtcttatccattttccagaagcttcccaccattgatattcttattcgcactcc |
133 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||||| ||||| || ||| |||||||| |||||||| || ||||||| ||| ||| ||| |
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| T |
6040771 |
tactcaattccggagaacgaaattggctggatcttccaaaagatgtggtattaaccattttcgagaagcttggaacaattgatacccttcatcgtgctca |
6040870 |
T |
|
| Q |
134 |
cagggtttgcactacgtggcgcaaaatctccaaagaccctttcctctatcgtaccatcgacatg |
197 |
Q |
| |
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| |||||||| || |||||||||||||| || || ||||||||||||| |||||||||||| |
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| T |
6040871 |
taatgtttgcaccacatggcgcaaaatctcaaaggatcctttcctctatcacaccatcgacatg |
6040934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 6052307 - 6052372
Alignment:
| Q |
247 |
ttgattacagctgcggccaaataatccatatcaacatcaactatttttgtaccaatgatcttctcc |
312 |
Q |
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||||||||||||||||||| ||||| ||||||||||| | |||||| |||| |||||||||||| |
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| T |
6052307 |
ttgattacagctgcggccacataattgatatcaacatcgagtattttggtactgatgatcttctcc |
6052372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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