View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15922_low_7 (Length: 382)
Name: NF15922_low_7
Description: NF15922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15922_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 32756538 - 32756185
Alignment:
| Q |
13 |
aaaatatccttcaagatacagggtttatgctccaaccaaattcataatatcattggcacaaatcacacattgacttaaaatttagaaactggcctgtatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32756538 |
aaaatatccttcaagatacagggtttatgctccaaccaaattcataatatcattggcacaaatcacacgttgacttaaaatttagaaactggcctgtatc |
32756439 |
T |
|
| Q |
113 |
acacattggcttttaaaaacttgcctcttcagttccacttctaagtattgaccaaaaaggatgaacaagaaatgtacatgtcatgattacaaatgacagg |
212 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32756438 |
acacattggcttttaaaaactggcctcttcagttccacttctaagtattgacctaaaaggatgaacaagaaatgtacatgtcatgattacaaatgacagg |
32756339 |
T |
|
| Q |
213 |
gtaaagagcaagacataatgtacatatcagggaaagaactttatgtgatctgtgatcctgtagtattaattctatcaaagcaccacaggccaaattattt |
312 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
32756338 |
gtaaagagcaagacataatgtacatatcagggaaacaactttatgtgatctgtgatcgtgtagtattaattctatcaaagcaccacaggccaaattatgt |
32756239 |
T |
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| Q |
313 |
tttgattttcaacagaatctttctttggttattggcaggtatattttaatttat |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32756238 |
tttgattttcaacagaatctttctttggttattggcaggtatattttaatttat |
32756185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 32766918 - 32766565
Alignment:
| Q |
13 |
aaaatatccttcaagatacagggtttatgctccaaccaaattcataatatcattggcacaaatcacacattgacttaaaatttagaaactggcctgtatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32766918 |
aaaatatccttcaagatacagggtttatgctccaaccaaattcataatatcattggcacaaatcacacgttgacttaaaatttagaaactggcctgtatc |
32766819 |
T |
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| Q |
113 |
acacattggcttttaaaaacttgcctcttcagttccacttctaagtattgaccaaaaaggatgaacaagaaatgtacatgtcatgattacaaatgacagg |
212 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32766818 |
acacattggcttttaaaaactggcctcttcagttccacttctaagtattgacctaaaaggatgaacaagaaatgtacatgtcatgattacaaatgacagg |
32766719 |
T |
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| Q |
213 |
gtaaagagcaagacataatgtacatatcagggaaagaactttatgtgatctgtgatcctgtagtattaattctatcaaagcaccacaggccaaattattt |
312 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
32766718 |
gtaaagagcaagacataatgtacatatcagggaaacaactttatgtgatctgtgatcctgtagtattaattctatcaaagcaccacagttcaaattatgt |
32766619 |
T |
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| Q |
313 |
tttgattttcaacagaatctttctttggttattggcaggtatattttaatttat |
366 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32766618 |
tttgattttcgacagaatctttctttggttattggcaggtatattttaatttat |
32766565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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