View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15922_low_8 (Length: 362)
Name: NF15922_low_8
Description: NF15922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15922_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 347
Target Start/End: Complemental strand, 23422322 - 23421984
Alignment:
| Q |
6 |
gaacaaaatgatgcatgatgaggatattatgtcacctagtaatccttggcaagttaattgttatgcaattagtgctaaaactgcttctgagcataacacc |
105 |
Q |
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| T |
23422322 |
gaacaaaatgatgcatgatgaggatattgtgtcgcctagtaatccttggcaagttaattgttatgcagttagggctaaaactgcttctgagcataacacc |
23422223 |
T |
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| Q |
106 |
a---tataatgactgttttggaaagtatcaagtggtaggcccctgaaagtagttggatccattttaacactgatggcacatataaaggagggactaggag |
202 |
Q |
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| T |
23422222 |
accatataatgactgttttggaaagtatcaagtgttaggcccctgaaagtagttggatccattttaacactgatggcacatataaaggag------ggag |
23422129 |
T |
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| Q |
203 |
tcttgctggatgcagaggagtgtcacgtgggaagaatggcaaatggatctgtatcttttcgaaaagattgggggtgtgtagcgcgtatgtggcggaactt |
302 |
Q |
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| T |
23422128 |
tcttgctggatgcagaggagtgtcacgtgggaagaatggcaaatggatctgtatcttttcgaaaagattgggggtgtgtagtgcgtatgtggcggaactt |
23422029 |
T |
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| Q |
303 |
ttgggaatttttgaaggtttgaatttggctcgaccgcatggtttc |
347 |
Q |
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| T |
23422028 |
ttgggaatttttgaaggtttgaatttggctcgaccgcatggtttc |
23421984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 44 - 347
Target Start/End: Original strand, 23876774 - 23877070
Alignment:
| Q |
44 |
gtaatccttggcaagttaattgttatgcaattagtgctaaaactgcttctgagcataacaccatataatgactgttttggaaagtatcaagtggtaggcc |
143 |
Q |
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| T |
23876774 |
gtaatccttggcgtgttaattgttatgtggttagtgctaaaactgcttctgagcagaacac--tacaatgactgttttggaaaatttt---tggcaggcc |
23876868 |
T |
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| Q |
144 |
cctgaaagtagttggat-----ccattttaacactgatggcacatataaaggagggactaggagtcttgctggatgcagaggagtgtcacgtgggaagaa |
238 |
Q |
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| T |
23876869 |
cctgaaagtggttggattgggtccgttttaacatggatgacacata--aaggaggga------gtgttgctggaagtagaggagtgttgcatgggtagaa |
23876960 |
T |
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| Q |
239 |
tggcaaatg-gatctgtatcttttcgaaaagattgggggtgtgtagcgcgtatgtggcggaacttttgggaatttttgaaggtttgaatttggctcgacc |
337 |
Q |
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| T |
23876961 |
tgacacatttgatctgtgtcttttcgaagagattgggggtgtgtagcacgtatgtggcggaacttttgggagtttttgaaggttttaatttggctcgacc |
23877060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 332
Target Start/End: Complemental strand, 23419960 - 23419858
Alignment:
| Q |
230 |
tgggaagaatggcaaatggatctgtatcttttcgaaaagattgggggtgtgtagcgcgtatgtggcggaacttttgggaatttttgaaggtttgaatttg |
329 |
Q |
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|||| ||||| |||||||||||||| |||||| | | |||||| || | |||||||||| ||||||||||||| | | |||||||||||||||||||| |
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| T |
23419960 |
tggggagaatagcaaatggatctgtgtctttttggagagattgtggttaagtagcgcgtaagtggcggaactttggatagtttttgaaggtttgaatttg |
23419861 |
T |
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| Q |
330 |
gct |
332 |
Q |
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||| |
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| T |
23419860 |
gct |
23419858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 332
Target Start/End: Original strand, 23883349 - 23883451
Alignment:
| Q |
230 |
tgggaagaatggcaaatggatctgtatcttttcgaaaagattgggggtgtgtagcgcgtatgtggcggaacttttgggaatttttgaaggtttgaatttg |
329 |
Q |
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|||| |||||||||||| |||| || |||||| ||| |||||| ||| | |||||||||||||| ||||||| | | ||||||||||||||||||| |
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| T |
23883349 |
tggggagaatggcaaattgatcagtgtcttttggaagagattgcgggcaagcagcgcgtatgtggcagaactttggatagattttgaaggtttgaatttg |
23883448 |
T |
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| Q |
330 |
gct |
332 |
Q |
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||| |
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| T |
23883449 |
gct |
23883451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 23883133 - 23883182
Alignment:
| Q |
6 |
gaacaaaatgatgcatgatgaggatattatgtcacctagtaatccttggc |
55 |
Q |
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||||| || |||||||||||||||| || ||||||||||||||||||||| |
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| T |
23883133 |
gaacagaaggatgcatgatgaggattttgtgtcacctagtaatccttggc |
23883182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 23420165 - 23420118
Alignment:
| Q |
6 |
gaacaaaatgatgcatgatgaggatattatgtcacctagtaatccttg |
53 |
Q |
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| T |
23420165 |
gaacagaacgatgcatgatgaggattttgtgtcacctagtaatccttg |
23420118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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