View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15923_high_1 (Length: 672)

Name: NF15923_high_1
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15923_high_1
NF15923_high_1
[»] chr2 (36 HSPs)
chr2 (176-648)||(19472589-19473070)
chr2 (12-76)||(2920464-2920528)
chr2 (12-76)||(24512228-24512292)
chr2 (61-175)||(2917619-2917733)
chr2 (64-166)||(35490625-35490727)
chr2 (61-175)||(45475376-45475490)
chr2 (14-76)||(41500184-41500246)
chr2 (61-174)||(41181374-41181487)
chr2 (61-176)||(19186682-19186797)
chr2 (12-75)||(40679545-40679608)
chr2 (61-171)||(43950265-43950374)
chr2 (61-174)||(28342460-28342573)
chr2 (61-174)||(35493364-35493477)
chr2 (12-78)||(29093779-29093842)
chr2 (12-76)||(43491170-43491234)
chr2 (104-174)||(16580482-16580552)
chr2 (100-181)||(19187285-19187366)
chr2 (12-76)||(2648178-2648242)
chr2 (12-64)||(16580559-16580611)
chr2 (12-76)||(39393098-39393162)
chr2 (71-166)||(24512112-24512207)
chr2 (12-75)||(26858175-26858238)
chr2 (100-175)||(45479856-45479931)
chr2 (18-76)||(10365746-10365804)
chr2 (61-175)||(34921782-34921895)
chr2 (14-82)||(28472142-28472214)
chr2 (12-65)||(34638212-34638262)
chr2 (61-175)||(23409524-23409638)
chr2 (99-161)||(43493318-43493380)
chr2 (61-166)||(41497417-41497522)
chr2 (67-175)||(19469921-19470028)
chr2 (67-174)||(41500263-41500370)
chr2 (61-134)||(1101075-1101148)
chr2 (61-174)||(9660078-9660191)
chr2 (67-168)||(12905492-12905593)
chr2 (61-174)||(25184853-25184965)
[»] chr4 (40 HSPs)
chr4 (12-175)||(34154376-34154539)
chr4 (12-174)||(56304814-56304975)
chr4 (61-175)||(29700325-29700439)
chr4 (67-175)||(4768614-4768722)
chr4 (12-84)||(34530743-34530815)
chr4 (14-109)||(6283417-6283512)
chr4 (12-125)||(39588078-39588191)
chr4 (12-76)||(56138313-56138377)
chr4 (61-175)||(958617-958730)
chr4 (61-175)||(21472507-21472621)
chr4 (12-82)||(51429277-51429347)
chr4 (61-170)||(49572923-49573032)
chr4 (12-76)||(44561278-44561342)
chr4 (61-175)||(37959743-37959857)
chr4 (12-76)||(958542-958606)
chr4 (12-78)||(42885508-42885576)
chr4 (68-174)||(38464796-38464901)
chr4 (61-174)||(4979940-4980053)
chr4 (67-175)||(955728-955836)
chr4 (15-78)||(243296-243359)
chr4 (16-76)||(1041996-1042056)
chr4 (14-65)||(28081530-28081582)
chr4 (119-175)||(49422079-49422135)
chr4 (71-175)||(51426473-51426577)
chr4 (26-75)||(4786296-4786345)
chr4 (118-175)||(18581375-18581432)
chr4 (119-175)||(44558636-44558692)
chr4 (143-175)||(44561435-44561467)
chr4 (128-175)||(48256653-48256700)
chr4 (128-175)||(51644564-51644611)
chr4 (105-175)||(4774645-4774714)
chr4 (30-76)||(29700268-29700314)
chr4 (61-134)||(1044542-1044615)
chr4 (69-110)||(9472859-9472900)
chr4 (61-174)||(11494481-11494593)
chr4 (127-175)||(3450103-3450151)
chr4 (19-55)||(11287557-11287593)
chr4 (14-78)||(21017951-21018018)
chr4 (139-175)||(24417516-24417552)
chr4 (47-79)||(37865200-37865232)
[»] chr3 (53 HSPs)
chr3 (12-174)||(19454299-19454461)
chr3 (61-175)||(29929362-29929476)
chr3 (61-175)||(29978516-29978630)
chr3 (61-175)||(28611123-28611237)
chr3 (61-174)||(41579747-41579860)
chr3 (12-76)||(34694382-34694446)
chr3 (68-174)||(7247890-7247996)
chr3 (14-76)||(55207613-55207675)
chr3 (12-76)||(43568927-43568991)
chr3 (12-76)||(51696522-51696586)
chr3 (14-76)||(41803059-41803121)
chr3 (14-76)||(51402348-51402410)
chr3 (62-175)||(45101872-45101985)
chr3 (12-76)||(43476253-43476317)
chr3 (67-175)||(43571714-43571822)
chr3 (12-76)||(45101796-45101860)
chr3 (12-76)||(55385198-55385262)
chr3 (12-74)||(7245155-7245217)
chr3 (61-175)||(29918364-29918478)
chr3 (61-175)||(29967517-29967631)
chr3 (16-65)||(41137780-41137829)
chr3 (67-168)||(42804398-42804499)
chr3 (12-76)||(13896824-13896888)
chr3 (12-72)||(41577140-41577200)
chr3 (12-76)||(52570514-52570578)
chr3 (71-174)||(55267378-55267481)
chr3 (69-171)||(66841-66942)
chr3 (68-166)||(13896906-13897004)
chr3 (61-175)||(30256026-30256140)
chr3 (68-174)||(41577012-41577118)
chr3 (101-175)||(42807663-42807737)
chr3 (12-76)||(2271260-2271325)
chr3 (23-76)||(24703374-24703427)
chr3 (12-78)||(34648150-34648218)
chr3 (12-76)||(36134384-36134449)
chr3 (61-174)||(46344874-46344987)
chr3 (12-76)||(49609444-49609508)
chr3 (12-74)||(4004750-4004813)
chr3 (67-174)||(55207692-55207799)
chr3 (61-175)||(19440192-19440306)
chr3 (61-170)||(41802939-41803048)
chr3 (12-65)||(49219739-49219792)
chr3 (69-174)||(52570597-52570701)
chr3 (12-62)||(2426559-2426609)
chr3 (68-174)||(2432973-2433079)
chr3 (104-174)||(7837529-7837599)
chr3 (60-174)||(11380378-11380492)
chr3 (61-174)||(41805698-41805811)
chr3 (61-174)||(48250892-48251005)
chr3 (61-173)||(42756097-42756209)
chr3 (14-82)||(46402411-46402483)
chr3 (143-175)||(43568862-43568894)
chr3 (97-169)||(48246354-48246426)
[»] chr8 (27 HSPs)
chr8 (12-175)||(3395828-3395991)
chr8 (61-175)||(7168024-7168138)
chr8 (67-174)||(18441470-18441577)
chr8 (12-78)||(18441389-18441455)
chr8 (61-174)||(18438571-18438684)
chr8 (61-174)||(41858144-41858257)
chr8 (12-82)||(22547498-22547568)
chr8 (14-76)||(41858073-41858135)
chr8 (16-76)||(26451541-26451601)
chr8 (61-173)||(41855306-41855418)
chr8 (68-175)||(22577601-22577708)
chr8 (12-76)||(41274653-41274717)
chr8 (61-171)||(42602400-42602510)
chr8 (14-82)||(37779707-37779773)
chr8 (61-174)||(38872953-38873066)
chr8 (26-169)||(38871741-38871884)
chr8 (14-76)||(42602521-42602583)
chr8 (61-174)||(35389445-35389558)
chr8 (61-142)||(35940408-35940489)
chr8 (12-71)||(24860448-24860507)
chr8 (102-174)||(5300684-5300756)
chr8 (61-174)||(39751011-39751123)
chr8 (113-174)||(40077325-40077386)
chr8 (147-175)||(51341-51369)
chr8 (139-175)||(4866371-4866407)
chr8 (67-159)||(18205738-18205830)
chr8 (91-167)||(43690086-43690162)
[»] chr5 (34 HSPs)
chr5 (69-174)||(3603179-3603284)
chr5 (14-166)||(42865754-42865906)
chr5 (70-175)||(1398540-1398645)
chr5 (61-174)||(20192290-20192403)
chr5 (12-76)||(542738-542802)
chr5 (61-175)||(34682193-34682307)
chr5 (12-76)||(18307315-18307379)
chr5 (12-76)||(35564322-35564386)
chr5 (61-175)||(18538358-18538472)
chr5 (67-175)||(19228675-19228783)
chr5 (12-76)||(25497572-25497636)
chr5 (67-174)||(18310050-18310157)
chr5 (61-174)||(20200171-20200284)
chr5 (67-174)||(3600273-3600381)
chr5 (67-175)||(24053116-24053224)
chr5 (12-76)||(11346068-11346133)
chr5 (12-76)||(3600398-3600462)
chr5 (61-124)||(8702221-8702284)
chr5 (26-76)||(20192414-20192464)
chr5 (101-167)||(35567090-35567156)
chr5 (12-76)||(8537226-8537291)
chr5 (128-171)||(1401435-1401478)
chr5 (91-173)||(512793-512875)
chr5 (100-174)||(42537138-42537212)
chr5 (12-52)||(1401388-1401428)
chr5 (127-175)||(24049973-24050021)
chr5 (67-175)||(33993216-33993324)
chr5 (61-172)||(33995171-33995282)
chr5 (91-174)||(39743201-39743284)
chr5 (61-164)||(41201675-41201778)
chr5 (67-174)||(41799796-41799903)
chr5 (61-167)||(38968039-38968145)
chr5 (61-175)||(25499910-25500026)
chr5 (67-175)||(1397379-1397487)
[»] chr7 (43 HSPs)
chr7 (12-111)||(21188374-21188473)
chr7 (61-175)||(9494829-9494943)
chr7 (14-76)||(30355189-30355251)
chr7 (74-172)||(48316296-48316394)
chr7 (69-174)||(48314611-48314715)
chr7 (67-174)||(21185556-21185663)
chr7 (12-82)||(34139926-34139996)
chr7 (12-174)||(48269618-48269766)
chr7 (61-174)||(36392062-36392175)
chr7 (12-76)||(41047838-41047902)
chr7 (12-76)||(46863292-46863356)
chr7 (69-175)||(10225874-10225981)
chr7 (67-174)||(28980202-28980309)
chr7 (67-174)||(46863373-46863480)
chr7 (12-74)||(42682057-42682119)
chr7 (15-76)||(28980123-28980184)
chr7 (61-174)||(30355262-30355375)
chr7 (12-76)||(28115480-28115544)
chr7 (12-76)||(36394886-36394950)
chr7 (67-174)||(45361586-45361693)
chr7 (12-76)||(17838711-17838776)
chr7 (61-174)||(27453617-27453730)
chr7 (61-174)||(41047715-41047827)
chr7 (12-76)||(40587722-40587786)
chr7 (67-174)||(37340239-37340346)
chr7 (99-169)||(10708331-10708401)
chr7 (101-175)||(28112778-28112852)
chr7 (68-174)||(34622436-34622542)
chr7 (61-174)||(41049212-41049324)
chr7 (61-174)||(47060864-47060976)
chr7 (61-162)||(47776281-47776382)
chr7 (67-175)||(10705184-10705292)
chr7 (16-76)||(43686859-43686919)
chr7 (12-71)||(45364168-45364227)
chr7 (128-175)||(47673018-47673065)
chr7 (61-175)||(36186496-36186609)
chr7 (100-174)||(40590553-40590627)
chr7 (61-174)||(42681931-42682044)
chr7 (69-165)||(46860457-46860553)
chr7 (91-174)||(19044231-19044314)
chr7 (91-174)||(20710322-20710405)
chr7 (101-167)||(42684226-42684292)
chr7 (14-50)||(48316259-48316295)
[»] chr1 (49 HSPs)
chr1 (69-175)||(19053995-19054101)
chr1 (12-82)||(27487614-27487684)
chr1 (12-95)||(14174859-14174942)
chr1 (61-175)||(46973140-46973254)
chr1 (12-76)||(29763167-29763231)
chr1 (12-76)||(42572705-42572769)
chr1 (61-175)||(13173772-13173885)
chr1 (61-174)||(11183123-11183236)
chr1 (12-175)||(35526983-35527150)
chr1 (12-79)||(44596893-44596960)
chr1 (61-175)||(41804056-41804170)
chr1 (14-76)||(49927451-49927513)
chr1 (12-65)||(26637204-26637257)
chr1 (62-175)||(36908514-36908627)
chr1 (61-174)||(46141719-46141832)
chr1 (12-82)||(49426742-49426813)
chr1 (61-174)||(13972001-13972112)
chr1 (12-65)||(13972134-13972187)
chr1 (12-76)||(6434809-6434873)
chr1 (61-175)||(13178155-13178267)
chr1 (26-76)||(49395664-49395714)
chr1 (61-174)||(18975143-18975256)
chr1 (61-174)||(23276131-23276244)
chr1 (61-175)||(26633466-26633577)
chr1 (12-76)||(29435034-29435097)
chr1 (71-175)||(35521550-35521654)
chr1 (61-175)||(19499135-19499247)
chr1 (72-175)||(21944414-21944517)
chr1 (69-174)||(6437570-6437675)
chr1 (12-77)||(13147556-13147621)
chr1 (12-65)||(51269010-51269063)
chr1 (16-64)||(4208454-4208502)
chr1 (108-175)||(1656155-1656221)
chr1 (67-174)||(49927542-49927649)
chr1 (61-175)||(36076581-36076694)
chr1 (62-175)||(49857873-49857984)
chr1 (61-174)||(49924793-49924906)
chr1 (120-175)||(7965977-7966032)
chr1 (67-162)||(27485008-27485103)
chr1 (128-175)||(36072306-36072353)
chr1 (12-62)||(29709259-29709309)
chr1 (12-59)||(36908648-36908699)
chr1 (107-173)||(36911737-36911803)
chr1 (12-50)||(41779766-41779804)
chr1 (101-175)||(42570078-42570152)
chr1 (121-174)||(35181334-35181387)
chr1 (70-163)||(35258904-35258997)
chr1 (19-55)||(24364680-24364716)
chr1 (14-62)||(44338216-44338264)
[»] chr6 (24 HSPs)
chr6 (12-125)||(29061282-29061395)
chr6 (12-82)||(32034340-32034410)
chr6 (12-76)||(12783905-12783969)
chr6 (63-175)||(13479662-13479774)
chr6 (12-74)||(29065791-29065853)
chr6 (12-74)||(29074804-29074866)
chr6 (12-74)||(29079568-29079630)
chr6 (12-74)||(29107377-29107439)
chr6 (61-174)||(35021286-35021399)
chr6 (12-76)||(13401547-13401611)
chr6 (61-175)||(23958826-23958940)
chr6 (72-155)||(12783991-12784074)
chr6 (102-168)||(26701795-26701861)
chr6 (67-156)||(23986010-23986099)
chr6 (67-174)||(13404661-13404768)
chr6 (128-175)||(32026041-32026088)
chr6 (61-166)||(2050974-2051078)
chr6 (61-174)||(13401423-13401536)
chr6 (61-174)||(25141102-25141215)
chr6 (19-56)||(26855976-26856013)
chr6 (12-56)||(17596764-17596808)
chr6 (67-175)||(18001150-18001257)
chr6 (101-174)||(6320552-6320625)
chr6 (61-174)||(29286166-29286279)
[»] scaffold0388 (1 HSPs)
scaffold0388 (63-175)||(11735-11847)
[»] scaffold0176 (1 HSPs)
scaffold0176 (12-82)||(851-921)
[»] scaffold0192 (1 HSPs)
scaffold0192 (12-76)||(18847-18911)
[»] scaffold0199 (1 HSPs)
scaffold0199 (12-76)||(12335-12400)
[»] scaffold0360 (1 HSPs)
scaffold0360 (67-167)||(7333-7433)
[»] scaffold0618 (1 HSPs)
scaffold0618 (61-174)||(3823-3935)
[»] scaffold1379 (1 HSPs)
scaffold1379 (68-174)||(464-570)
[»] scaffold0147 (1 HSPs)
scaffold0147 (127-175)||(884-932)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 176 - 648
Target Start/End: Original strand, 19472589 - 19473070
Alignment:
Q  176 gtttcaattcagtaaattgaagaccttactgtaccttacggtaaaatgacgatgaaaactggtaaaagaggcaaattaggaat----------------c 259  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||                |    
T  19472589 gtttcaattcagtaaattgaagactttattgtaccttacggtaaaatgacgatgaaaactggtaaaagaggcaaattaggaatcggacttttgccgaatc 19472688  T
Q  260 ggacttttgccgcataaattaaacatatataccaaatgaactgtgctaacttcaaagtactgtgaggtcccatgctttgcattattttcaccgctaagtt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19472689 ggacttttgccgcataaattaaacatatataccaaatgaactgtgctaacttcaaagtactgtgaggtcccatgctttgcattattttcaccgctaagtt 19472788  T
Q  360 tcaaacacgaaaagaaaaatgacctaacatgcatcaatgttttcatgtctgagagactgagaccattctatatcagacagatcgtacaatgataatttta 459  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  19472789 tcaaacacgaaaagaaaaatgacctaacatgcgtcaatgttttcatgt--------ctgagaccattctatatcagacagatcgtacaatgataatttta 19472880  T
Q  460 cattatctttcgaagcaacttgctgctgagtcccaacaaatcaccgaaaaagtacttnnnnnnntatatataggttaaattcttagtcaaattataggcc 559  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||| ||||||||||||    
T  19472881 cattatctttctcagcaacttgctgctgagtcccaacaaatcaccgaaaaagtacttaaaaaaatatatataggttaaatgcttagtaaaattataggcc 19472980  T
Q  560 aaatatgataatctctaaaaattattcaatataaattcttcaa--nnnnnnnnattaaagttgtattgaattcctattgaatatataaata 648  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||| |||||||||||    
T  19472981 aaatatgataatctctaaaaattattcaatataaattcttcaattttttttttattaaagttgtattgaattcctattg-atatataaata 19473070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 2920464 - 2920528
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  2920464 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 2920528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 24512292 - 24512228
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  24512292 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 24512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 2917733 - 2917619
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||| |||| ||| || ||||  || ||||||||||| |||||| |||||||  ||||||| || |||| |||||||||||||||||    
T  2917733 tcctcggcagttaactgtagccggtttttcaatttctcggcagttaactgccgagggggcaaaaacgtattttacttttgtgcctcagccttatgaaatg 2917634  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  2917633 tgtcaacaacaattt 2917619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 35490727 - 35490625
Alignment:
Q  64 tcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgt 163  Q
    ||||||||||||||||||| ||| |||||||| || ||||||||| |||||||  |||||||| ||||||| |  ||||||||||||||||| |||||||    
T  35490727 tcagcagttaactgcagccggtttttgaattcttcggcagttaaccgtcgaggaggcaaaaatgtattttactcgtgtgtctcagccttatgcaatgtgt 35490628  T
Q  164 caa 166  Q
    |||    
T  35490627 caa 35490625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 45475490 - 45475376
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||| |||| ||| |||||||  || ||||||||||| |||||| ||||||   ||||||| || ||||||||||||||||||||||    
T  45475490 tcctcggcagttaactgtagccggtttttgaatttctcggcagttaactgccgagggggcaaaatcgtattttacttgtgtgtctcagccttatgaaatg 45475391  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||| ||||||    
T  45475390 tgtcaacatcaattt 45475376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 41500184 - 41500246
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  41500184 agatgaataatggatgagagagcttatgccagatttgtagcagaagatcctcggcagttaact 41500246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 41181487 - 41181374
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||| || |||| |||||||||||| || ||||||||||| |||||| |||||||  ||||||| |  |||| |||||||||||| ||||    
T  41181487 tcctcggcagttaaatgtagccggttattgaattcctcggcagttaactgccgagggggcaaaaacgtattttactcgtgtgcctcagccttatgcaatg 41181388  T
Q  161 tgtcaacaacaatt 174  Q
    |||||||| |||||    
T  41181387 tgtcaacatcaatt 41181374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 19186797 - 19186682
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    |||| |||||||||||||||||  || |||||||  || |||||| |||| ||| || | |||||  ||||||| || |||||||||||||||||| |||    
T  19186797 tccttagcagttaactgcagccgctttttgaattgctcggcagtttactgccgatggggtaaaaacgtattttacttgtgtgtctcagccttatgatatg 19186698  T
Q  161 tgtcaacaacaatttg 176  Q
    ||||||||||||||||    
T  19186697 tgtcaacaacaatttg 19186682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 40679545 - 40679608
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaac 75  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||||||| |||||||||    
T  40679545 tgagatgaataatggatgagagaggttcttccagatttgtagcagaagatcctcggcagttaac 40679608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 43950265 - 43950374
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||| ||||| | ||| ||||||||  ||||||||||||| |||||| |||||||| ||||||| |  ||| |||||||||||| |||||    
T  43950265 tcctcggcagttaattgcagtcggtt-ttgaattccacagcagttaactgccgagggggcaaaaatgtattttactcgtgtttctcagccttatcaaatg 43950363  T
Q  161 tgtcaacaaca 171  Q
    |||||||||||    
T  43950364 tgtcaacaaca 43950374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 28342573 - 28342460
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||| ||||||| ||| |||||||| ||  |||||||||| ||| || |||||||  ||  ||| |||||||||| ||||||||| ||||    
T  28342573 tcctcggcagttaattgcagccggtttttgaattcttcgacagttaactgccgaaggggcaaaaacgtaaattacttatgtgtcttagccttatgcaatg 28342474  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  28342473 tgtcaacaacaatt 28342460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 35493364 - 35493477
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||  ||| |||||||| || ||||||||||  |||||| ||||||   ||||||| |  ||||||||| ||||||| ||||    
T  35493364 tcctcggcagttaactgcagctggtttttgaattcctcggcagttaactaccgagggggcaaaagcgtattttactcgtgtgtctcaaccttatgcaatg 35493463  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  35493464 tgtcaacaacaatt 35493477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 29093779 - 29093842
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgc 78  Q
    |||||||||||||   ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  29093779 tgagatgaataat---tgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgc 29093842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 43491234 - 43491170
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||||||||| || |||||||| ||| ||||||||||    
T  43491234 tgagatgaataatggatgagagagcttctgccagatttataacagaagattctcggcagttaact 43491170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 16580552 - 16580482
Alignment:
Q  104 ttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    |||||||||||||  |||||||| ||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  16580552 ttaactgtcgaggaggcaaaaatgtattttactcgtgtgtctcagccttatgcaatgtgtcaacaacaatt 16580482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 19187285 - 19187366
Alignment:
Q  100 gcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatttgtttca 181  Q
    ||||||||||| |||||| |||||||  ||||||| || |||||||||||||||||| |||| | ||||||||||| |||||    
T  19187285 gcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgatatgtctgaacaacaatttttttca 19187366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 2648242 - 2648178
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||||| || ||| ||||||    
T  2648242 tgagatgaataattgatgagagagtttctgccagatttgtagcagaagatcatcggcaattaact 2648178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 16580611 - 16580559
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcct 64  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||    
T  16580611 tgagatgaataatggatgagagaacttttgccagatttgtagcagaaaatcct 16580559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 39393162 - 39393098
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||  ||||||||||| |||||||||||  |||||||||    
T  39393162 tgagatgaataatggatgagagagcttctatcagatttgtagtagaagatcctcgacagttaact 39393098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 24512207 - 24512112
Alignment:
Q  71 ttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||||  ||| || ||||| ||| ||||||||||||||||| | |||||  ||||||| || ||| |||||||| |||||||||||||||    
T  24512207 ttaactgcagctggttttttaattcctcaacagttaactgtcgagggggtaaaaacgtattttacttgtgtttctcagccatatgaaatgtgtcaa 24512112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 26858238 - 26858175
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaac 75  Q
    ||||||||||||| |||||||||  ||||| || |||||||||||||||||||| |||||||||    
T  26858238 tgagatgaataattgatgagagaatttctgtcacatttgtagcagaagatcctcggcagttaac 26858175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 45479856 - 45479931
Alignment:
Q  100 gcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    ||||||||||| |||| ||||||||   ||||||| | |||| ||| |||||||||||||||||||||||||||||    
T  45479856 gcagttaactgccgagagagcaaaatcgtattttactcatgtttctgagccttatgaaatgtgtcaacaacaattt 45479931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 10365746 - 10365804
Alignment:
Q  18 gaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||||| ||| ||||||    
T  10365746 gaataatggatgagagagcttatgccagatttgtagcaaaagatcctcggcatttaact 10365804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 34921782 - 34921895
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    |||||||||||||||||||||| ||| |||||||  || ||||||||||  || ||| |||||||  ||||||| |  ||| |||| |||||||||||||    
T  34921782 tcctcagcagttaactgcagccggtttttgaatttctcggcagttaactaccg-gggggcaaaaacgtattttactcgtgtttctctgccttatgaaatg 34921880  T
Q  161 tgtcaacaacaattt 175  Q
    |||||| | ||||||    
T  34921881 tgtcaatagcaattt 34921895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 28472214 - 28472142
Alignment:
Q  14 agatgaataatggatgagag-accttctgccagattt-gtag--cagaagatcctcagcagttaactgcagcc 82  Q
    |||||||||||||||||||| |  ||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  28472214 agatgaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcagcagttaactgcagcc 28472142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 34638262 - 34638212
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctc 65  Q
    ||||||||||||||||||||||| |||||   ||||||||||||||||||||||    
T  34638262 tgagatgaataatggatgagagagcttct---agatttgtagcagaagatcctc 34638212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 23409524 - 23409638
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||||||| |||||||| || ||| ||||||| |||| | |||||    ||||||| |  ||||  ||||||||||| || |    
T  23409524 tcctcggcagttaactgcagccagtttttgaattcctcggcaattaactgccgagagggcaaacgcgtattttactagtgtgcatcagccttatgtaacg 23409623  T
Q  161 tgtcaacaacaattt 175  Q
    |||| ||||||||||    
T  23409624 tgtccacaacaattt 23409638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 43493318 - 43493380
Alignment:
Q  99 agcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgt 161  Q
    |||||||||||| |||||| |||||||  ||||||| || ||||||||||||||||| |||||    
T  43493318 agcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgtaatgt 43493380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 41497522 - 41497417
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||| |||||||||||| ||| |||||||| || |||||||| ||||||||  |||||||  ||  ||| |  |||| |||||||||||| ||||    
T  41497522 tcctcggcaattaactgcagccggtttttgaattcttcggcagttaagtgtcgaggtggcaaaaacgtaaattactcgtgtgcctcagccttatgcaatg 41497423  T
Q  161 tgtcaa 166  Q
    ||||||    
T  41497422 tgtcaa 41497417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 19470028 - 19469921
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||| || |||||||||||| |||  |||||||||| || |||  |||||  ||||||| || ||||| ||| |||||| |||||| ||||    
T  19470028 gcagttaactgcaaccggttattgaattcctcaatagttaactgt-gaaggaaaaaaaacgtattttacttgtgtgtgtcaaccttataaaatgtatcaa 19469930  T
Q  167 caacaattt 175  Q
     ||||||||    
T  19469929 gaacaattt 19469921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 41500263 - 41500370
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||||||||| | | |||||||| |    ||||||||| |||||| ||||||   ||||||| |  ||| |||||||| |||||||||||||||    
T  41500263 gcagttaactgcagccggattttgaattctttgatagttaactgccgagggggcaaaagcgtattttactcgtgtttctcagccatatgaaatgtgtcaa 41500362  T
Q  167 caacaatt 174  Q
    || |||||    
T  41500363 catcaatt 41500370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 1101075 - 1101148
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatatttta 134  Q
    ||||| |||||||||| ||||| | | |  |||||||| ||||||||||| |||||||||||||  ||||||||    
T  1101075 tcctcggcagttaactacagccggatttcaaattcatcggcagttaactgccgagggagcaaaatcatatttta 1101148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 9660078 - 9660191
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||| |||||||||| ||||||| |||| || ||||||||||| |||| | |||||||  ||  ||| |  |||  |||||| ||||| ||||    
T  9660078 tcctcggcagtcaactgcagccggttattgtattcctcggcagttaactgccgagagggcaaaaaagtaaattactcgtgtacctcagctttatgcaatg 9660177  T
Q  161 tgtcaacaacaatt 174  Q
    |||||||| |||||    
T  9660178 tgtcaacagcaatt 9660191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 12905593 - 12905492
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||||||  || || ||||  || ||||||||||| ||||||   ||||   ||||||| |  ||| ||||||||||||||||||||||||    
T  12905593 gcagttaactgcagccgatttttcaatttctcggcagttaactgccgaggggaaaaaagcgtattttactcttgtttctcagccttatgaaatgtgtcaa 12905494  T
Q  167 ca 168  Q
    ||    
T  12905493 ca 12905492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 25184853 - 25184965
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| |  ||||| ||  ||||||||||  ||||| |||||||  ||||||| |  |||| |||| ||||||| |||     
T  25184853 tcctcggcagttaactgcagccggtt-tcaaattcctcgacagttaactgctgagggggcaaaaacgtattttactcgtgtgcctcaaccttatgcaatc 25184951  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  25184952 tgtcaacaacaatt 25184965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 34154376 - 34154539
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaactgt 111  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||| || |||||||||||     
T  34154376 tgagatgaataatagatgagagagcttctgccagatttgtagcagaagatcctctgcagttaactgcagccggttttttaattcctcggcagttaactgc 34154475  T
Q  112 cgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    ||| ||  ||||||| |||||||    ||| |||||||||||||||||||||||||||||||||    
T  34154476 cgatgggacaaaaatgtattttacccgtgtttctcagccttatgaaatgtgtcaacaacaattt 34154539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 56304975 - 56304814
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaactgt 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||||| | || ||||| ||  ||||||||||     
T  56304975 tgagatgaataatggatgagagagcttctgccagatttgtagcagaaaatcctcggcaattaactgcagccagatttttaattcctcgacagttaactgc 56304876  T
Q  112 cgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    ||| || |||||||| ||||||| |  ||| ||||| |||||| |||||||  ||||||||||    
T  56304875 cgatgg-gcaaaaatgtattttactcgtgtttctcaaccttatcaaatgtgggaacaacaatt 56304814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 29700325 - 29700439
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||   |||||   ||||||| || |||| |||||||||||||||||    
T  29700325 tcctcggcagttaactgcagccggttattgaattcctcagcagttaactgtcgaggagacaaaagcgtattttacttgtgtgcctcagccttatgaaatg 29700424  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  29700425 tgtcaacaacaattt 29700439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 4768722 - 4768614
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||||||||||| | |||||||| || ||||||||||| |||||| |||||| ||||||||| || ||||  ||||||||||||||||||||||    
T  4768722 gcagttaactgcagccagattttgaattcctcggcagttaactgccgagggggcaaaattatattttacttgtgtgcatcagccttatgaaatgtgtcaa 4768623  T
Q  167 caacaattt 175  Q
    |||||||||    
T  4768622 caacaattt 4768614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 34530743 - 34530815
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccag 84  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  34530743 tgagatgaataatggatgagagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccag 34530815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 6283417 - 6283512
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaact 109  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||  | ||||||||||    
T  6283417 agatgaataatggatgagagagcttcggccagatttgaagcagaagatcctcggcagttaactgcagccggtttttgaattctgcggcagttaact 6283512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 39588191 - 39588078
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaactgt 111  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |   | |  ||||| || |||||||||||     
T  39588191 tgagatgaataatggatgagagagcttctgccatatttgtagcagaagatcctcggcagttaactgcagtcgaatttctaattcctcggcagttaactgc 39588092  T
Q  112 cgagggagcaaaaa 125  Q
    |||||| |||||||    
T  39588091 cgagggggcaaaaa 39588078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 56138377 - 56138313
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  56138377 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 56138313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 958617 - 958730
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||| || ||| ||||||||||| |||||||||||||||| |  ||||||  ||||||| ||||||| ||||||||||| |||||    
T  958617 tcctcggcagttaactgcaaccggtttttgaattcatc-gcagttaactgtcgagaggacaaaaacgtattttacttatgtgcctcagccttataaaatg 958715  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||| ||||||    
T  958716 tgtcaacatcaattt 958730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 21472507 - 21472621
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||||||  || |||||||| || ||||||||||| |||||  |||||||  ||||||| |  ||| ||||||||||||||||||    
T  21472507 tcctcggcagttaactgcagccgatttttgaattcctcggcagttaactgccgaggcggcaaaaacgtattttactcgtgtttctcagccttatgaaatg 21472606  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  21472607 tgtcaacaacaattt 21472621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 51429277 - 51429347
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagcc 82  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||    
T  51429277 tgagatgaataatggatgagagagcttcttccagatttgtagcagaagatcctcgacagttaactgcagcc 51429347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 49572923 - 49573032
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||||||  ||||||||||| ||  |||||||||||||| || |||||||  ||||||| || |||| |||||||||||| ||||    
T  49572923 tcctcggcagttaactgcagccgattattgaattcctcgacagttaactgtcgatggggcaaaaacgtattttacttgtgtgcctcagccttatgcaatg 49573022  T
Q  161 tgtcaacaac 170  Q
    ||||||||||    
T  49573023 tgtcaacaac 49573032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 44561278 - 44561342
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||    
T  44561278 tgagatgaataatggatgagagagcttctgccagatttgtagcagacgatcctcggcagttaact 44561342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 37959743 - 37959857
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||  |||||| ||||| ||| |||||||||| |||||| | |||||  ||||||| |  |||| |||||||||||| ||||    
T  37959743 tcctcggcagttaactgcagctggttattaaattcctcaacagttaactgccgagggggtaaaaacgtattttactcgtgtgcctcagccttatgtaatg 37959842  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  37959843 tgtcaacaacaattt 37959857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 958542 - 958606
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||    
T  958542 tgagaagaataatggatgagagagcttctgccggatttgtagcagaagatcctcggcagttaact 958606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 42885576 - 42885508
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccaga--tttgtagcagaagatcctcagcagttaactgc 78  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||||||| || ||||||||||||    
T  42885576 tgagatgaataatggatgagagagcttctgccagatttttgtagcagaagatcatcggcagttaactgc 42885508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 38464796 - 38464901
Alignment:
Q  68 cagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaac 167  Q
    ||||||||||||||| ||| | |||||| ||  || ||||||||||||| |||||||  |||||||| | ||||  |||| |||||||||||||||||||    
T  38464796 cagttaactgcagccggtt-tcgaattcctcgtcatttaactgtcgaggaagcaaaatcatattttactcatgtacctcaaccttatgaaatgtgtcaac 38464894  T
Q  168 aacaatt 174  Q
    |||||||    
T  38464895 aacaatt 38464901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 4979940 - 4980053
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    |||||||||||||||||||||| ||| ||||| || ||  |||||||||| |||||||| |||||  ||  ||| |  |||| |||| ||||||| ||||    
T  4979940 tcctcagcagttaactgcagccggtttttgaaatcgtcgacagttaactgccgagggaggaaaaacgtaaattactcgtgtgcctcaaccttatgcaatg 4980039  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  4980040 tgtcaacaacaatt 4980053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 955836 - 955728
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||||||  || |||||||| |||||||||||||| | | |  |||||||  ||||||| || |||| |||| | ||||||||||||||||    
T  955836 gcagttaactgcagccgatttttgaattcctcagcagttaactgccaaagaggcaaaaacgtattttacttgtgtgcctcaactttatgaaatgtgtcaa 955737  T
Q  167 caacaattt 175  Q
    || ||||||    
T  955736 catcaattt 955728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 243296 - 243359
Alignment:
Q  15 gatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgc 78  Q
    |||||||||||  ||||||| ||||||||||||||||| ||||||||||||  |||||||||||    
T  243296 gatgaataatgagtgagagagcttctgccagatttgtaacagaagatcctcgacagttaactgc 243359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 1042056 - 1041996
Alignment:
Q  16 atgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||| |||| |||||||| ||| |||||||||||||| ||||||||||| ||||||||||    
T  1042056 atgaacaatgaatgagagagcttatgccagatttgtagtagaagatcctcggcagttaact 1041996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 28081582 - 28081530
Alignment:
Q  14 agatgaataatggatgagag-accttctgccagatttgtagcagaagatcctc 65  Q
    |||||||||||||||||||| |  |||||||||||||||||||||||||||||    
T  28081582 agatgaataatggatgagaggagattctgccagatttgtagcagaagatcctc 28081530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 49422135 - 49422079
Alignment:
Q  119 gcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||  |||||||||| |||| |||||||||||||||||||| |||||||||||    
T  49422135 gcaaaaacgtattttatttgtgtgactcagccttatgaaatgtgtaaacaacaattt 49422079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 51426577 - 51426473
Alignment:
Q  71 ttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaac 170  Q
    ||||||||||||  || |||||||| ||  ||||||||||||||  |  ||||||  ||||||| || |||| || |||||||||||| |||||||||||    
T  51426577 ttaactgcagccgatttttgaattcctcgacagttaactgtcgaaaggacaaaaacgtattttacttgtgtgcctaagccttatgaaacgtgtcaacaac 51426478  T
Q  171 aattt 175  Q
    |||||    
T  51426477 aattt 51426473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 4786296 - 4786345
Alignment:
Q  26 gatgagagaccttctgccagatttgtagcagaagatcctcagcagttaac 75  Q
    ||||||||| ||||| ||||||||||||||||||||| || |||||||||    
T  4786296 gatgagagagcttctaccagatttgtagcagaagatcatcggcagttaac 4786345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 18581375 - 18581432
Alignment:
Q  118 agcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    ||||||| ||||||| | || |||| |||| |||||||||||||||||||||||||||    
T  18581375 agcaaaattatatttaacttgtgtgcctcaaccttatgaaatgtgtcaacaacaattt 18581432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 44558692 - 44558636
Alignment:
Q  119 gcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||| | ||||||| || |||| |||||||||||| |||||||||||||||||||    
T  44558692 gcaaaagtgtattttacttgtgtgcctcagccttatgtaatgtgtcaacaacaattt 44558636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 44561435 - 44561467
Alignment:
Q  143 tctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||||||||||||||||||||||||||||    
T  44561435 tctcagccttatgaaatgtgtcaacaacaattt 44561467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 48256653 - 48256700
Alignment:
Q  128 tattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    ||||||| || |||| |||||||||||||||||||| |||||||||||    
T  48256653 tattttacttgtgtgcctcagccttatgaaatgtgtgaacaacaattt 48256700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 51644564 - 51644611
Alignment:
Q  128 tattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    ||||||| ||||||| |||||||| || ||||||||||||||||||||    
T  51644564 tattttacttatgtgcctcagcctaataaaatgtgtcaacaacaattt 51644611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 4774645 - 4774714
Alignment:
Q  105 taactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||| || |||| ||||||  ||||||| | |||| ||||||| |||||||||||||||||||||||||    
T  4774645 taactgccgtgggaacaaaaacgtattttactcatgtttctcagc-ttatgaaatgtgtcaacaacaattt 4774714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 29700268 - 29700314
Alignment:
Q  30 agagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||| ||||||||||||||||||||||||||| || ||| ||||||    
T  29700268 agagagcttctgccagatttgtagcagaagatcatcggcaattaact 29700314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 1044542 - 1044615
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatatttta 134  Q
    ||||| |||||||||||||||||| | |  ||||||||  |||||||||| ||| |||||||||  ||||||||    
T  1044542 tcctcggcagttaactgcagccagatttcaaattcatcgacagttaactgccgaaggagcaaaatcatatttta 1044615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 9472900 - 9472859
Alignment:
Q  69 agttaactgcagccagttattgaattcatcagcagttaactg 110  Q
    ||||||||||||||||||  ||||||| ||||||||||||||    
T  9472900 agttaactgcagccagtttatgaattcctcagcagttaactg 9472859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 11494593 - 11494481
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| |||||||| ||  ||||||| || ||||||  ||||||  ||||||| |  ||| ||||| |||| | |||||    
T  11494593 tcctcggcagttaactgcagccggtt-ttgaattcctcgacagttaattgccgaggggacaaaaacgtattttactcgtgtttctcacccttttcaaatg 11494495  T
Q  161 tgtcaacaacaatt 174  Q
    |||| |||||||||    
T  11494494 tgtcgacaacaatt 11494481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 3450103 - 3450151
Alignment:
Q  127 atattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||| || |||| |||||||||||||||| |||||||| ||||||    
T  3450103 atattttacttgtgtgcctcagccttatgaaatatgtcaacagcaattt 3450151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 11287593 - 11287557
Alignment:
Q  19 aataatggatgagagaccttctgccagatttgtagca 55  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  11287593 aataatggatgagagagcttctgccacatttgtagca 11287557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 21017951 - 21018018
Alignment:
Q  14 agatgaataatggatgagag-accttctgccagatttgtag--cagaagatcctcagcagttaactgc 78  Q
    ||||||||||| |||||||| |  |||||||||||||||||  ||||||||| || ||||||||||||    
T  21017951 agatgaataatagatgagaggagattctgccagatttgtagctcagaagatcatcggcagttaactgc 21018018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 24417516 - 24417552
Alignment:
Q  139 tgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  24417516 tgtgtctcagcgttatgatatgtgtcaacaacaattt 24417552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 37865232 - 37865200
Alignment:
Q  47 tttgtagcagaagatcctcagcagttaactgca 79  Q
    ||||||||||||||||||| |||||||||||||    
T  37865232 tttgtagcagaagatcctcggcagttaactgca 37865200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 19454299 - 19454461
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaactgt 111  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| ||  || |||||||| ||||||||||||||     
T  19454299 tgagatgaataatggatgagagagcttctgccagatttgtagtagaagatcctcggcagttaactgcaaccgatttttgaattcctcagcagttaactgc 19454398  T
Q  112 cgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    |||| | ||||||   ||||||| |  ||||||||| ||||||| ||||| ||||||||||||    
T  19454399 cgagagggcaaaagcgtattttactcgtgtgtctcaaccttatgcaatgtatcaacaacaatt 19454461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 29929476 - 29929362
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||| ||||||| ||| |||||||| ||| ||||||||||||||||||||||||  |||||||| || |||| ||||||||||| |||||    
T  29929476 tcctcggcagttaattgcagccggtttttgaattcctcaacagttaactgtcgagggagcaaaatcatattttacttgtgtgcctcagccttataaaatg 29929377  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  29929376 tgtcaacaacaattt 29929362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 29978630 - 29978516
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||| ||||||| ||| |||||||| ||| ||||||||||||||||||||||||  |||||||| || |||| ||||||||||| |||||    
T  29978630 tcctcggcagttaattgcagccggtttttgaattcctcaacagttaactgtcgagggagcaaaatcatattttacttgtgtgcctcagccttataaaatg 29978531  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  29978530 tgtcaacaacaattt 29978516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 28611123 - 28611237
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| |||||||  || ||||||||||| |||||| |||||| ||||||||| || ||||||||||||||||||||||    
T  28611123 tcctcggcagttaactgcagccggtttttgaatttctcggcagttaactgccgagggggcaaaattatattttacttgtgtgtctcagccttatgaaatg 28611222  T
Q  161 tgtcaacaacaattt 175  Q
    ||| || ||||||||    
T  28611223 tgtaaagaacaattt 28611237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 41579747 - 41579860
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| |||||||||||| |||||| ||||||| |||||| | ||||   ||||||| ||||||| |||||||||||| || |    
T  41579747 tcctcggcagttaactgcagccggttattgaattcctcagcaattaactgccgagggggaaaaatcgtattttacttatgtgcctcagccttatgcaacg 41579846  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  41579847 tgtcaacaacaatt 41579860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 34694382 - 34694446
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  34694382 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 34694446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 7247890 - 7247996
Alignment:
Q  68 cagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaac 167  Q
    ||||||||||||||| |||||||||||| || ||||||||||| |||||| ||||||   |||||||||  |||| |||||||||||  |||||||||||    
T  7247890 cagttaactgcagccggttattgaattcctcggcagttaactgccgagggggcaaaagcgtattttattcgtgtgcctcagccttatccaatgtgtcaac 7247989  T
Q  168 aacaatt 174  Q
    |||||||    
T  7247990 aacaatt 7247996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 55207613 - 55207675
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  55207613 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 55207675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 43568991 - 43568927
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||    
T  43568991 tgagatgaataatggatgagagagcttctgtcagatttgtaacagaagatcctcagcagttaact 43568927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 51696522 - 51696586
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  51696522 tgagatgaataatggatgagagagcttctgccagatttgcagcagaagatcctcggcagttaact 51696586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 41803121 - 41803059
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||    
T  41803121 agatgaataatggatgagagagcttctgccagatttgtagcaaaagatcctcggcagttaact 41803059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 51402348 - 51402410
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||    
T  51402348 agatgaataatggatgagagagcttctgacagatttgtagcagaagatcctcggcagttaact 51402410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 45101872 - 45101985
Alignment:
Q  62 cctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgt 161  Q
    |||| |||||||||||||||| ||| |||||||| ||| || ||||||| ||||||   |||||  ||||||| ||||||| |||| |||||||||||||    
T  45101872 cctcggcagttaactgcagccggtttttgaattcctcaacaattaactgccgaggggataaaaacgtattttacttatgtgcctcaaccttatgaaatgt 45101971  T
Q  162 gtcaacaacaattt 175  Q
    ||| ||||||||||    
T  45101972 gtcgacaacaattt 45101985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 43476317 - 43476253
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||||||    
T  43476317 tgagatgaataatggatgagagagcttctgtcagatttgtagcaaaagatcctcggcagttaact 43476253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 43571714 - 43571822
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||||||   | |||||||| |||||||||||||| |||||| ||||||| |||||||| || |||  || | ||||||| ||||||||||    
T  43571714 gcagttaactgcagccgacttttgaattcctcagcagttaactgccgagggggcaaaaacatattttacttgtgtacctgaaccttatgtaatgtgtcaa 43571813  T
Q  167 caacaattt 175  Q
    |||||||||    
T  43571814 caacaattt 43571822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 45101796 - 45101860
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||||||||||  |||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  45101796 tgagatgaataatatatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 45101860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 55385262 - 55385198
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  55385262 tgagattaataatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaact 55385198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 7245217 - 7245155
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaa 74  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||    
T  7245217 tgagatgaataatggatgagagagcttctgtcagatttgtagcagaagatactcggcagttaa 7245155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 29918364 - 29918478
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| | |||||  || |||||||| || ||||||  |||||   ||||||| ||||||| ||||||||||||||||     
T  29918364 tcctcggcagttaactgcagccggttttcgaattattcggcagttaattgccgaggggccaaaatcgtattttacttatgtgcctcagccttatgaaata 29918463  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  29918464 tgtcaacaacaattt 29918478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 29967517 - 29967631
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| | |||||  || |||||||| || ||||||  |||||   ||||||| ||||||| ||||||||||||||||     
T  29967517 tcctcggcagttaactgcagccggttttcgaattattcggcagttaattgccgaggggccaaaatcgtattttacttatgtgcctcagccttatgaaata 29967616  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  29967617 tgtcaacaacaattt 29967631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 41137829 - 41137780
Alignment:
Q  16 atgaataatggatgagagaccttctgccagatttgtagcagaagatcctc 65  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41137829 atgaataatggatgagagagcttctgccagatttgtagcagaagatcctc 41137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 42804499 - 42804398
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||| | |||| || ||||| || |||||||||| ||||||| || ||| | ||||||| || |||| |||||||||||||||||||||||    
T  42804499 gcagttaactgcaactagttttttaattcctcggcagttaactatcgagggggctaaagtgtattttacttgtgtgcctcagccttatgaaatgtgtcaa 42804400  T
Q  167 ca 168  Q
    ||    
T  42804399 ca 42804398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 13896824 - 13896888
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| ||| || ||||||||||    
T  13896824 tgagatgaataatggatgagagagcttctgccagatttgtagtagaaaatcttcggcagttaact 13896888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 41577200 - 41577140
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagtt 72  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  41577200 tgagatggataatggatgagagagcttctgcaagatttgtagcagaagatcctcggcagtt 41577140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 52570514 - 52570578
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||||||||||| ||||||||  ||||||||||||||||| ||||||||||| ||||||||||    
T  52570514 tgagatgaataatgaatgagagagtttctgccagatttgtagtagaagatcctcggcagttaact 52570578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 55267481 - 55267378
Alignment:
Q  71 ttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaac 170  Q
    ||||||||||||  || |||||||| || |||||||||||||||||| |||||||  ||  ||| |  ||||||||||||||||| || |||||||||||    
T  55267481 ttaactgcagccgatttttgaattcttcggcagttaactgtcgagggggcaaaaacgtaaattactcgtgtgtctcagccttatgcaacgtgtcaacaac 55267382  T
Q  171 aatt 174  Q
    ||||    
T  55267381 aatt 55267378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 66942 - 66841
Alignment:
Q  69 agttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaaca 168  Q
    |||||||||||||| ||| |||||| | || ||||||||||| |||||| ||||||   ||||||| |  |||||||||||||||| |||||||||||||    
T  66942 agttaactgcagccggtt-ttgaatacctcggcagttaactgccgagggggcaaaagcgtattttactcgtgtgtctcagccttatcaaatgtgtcaaca 66844  T
Q  169 aca 171  Q
    |||    
T  66843 aca 66841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 13896906 - 13897004
Alignment:
Q  68 cagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||||||||||||||| ||||| |||||| ||||||| |||||   |||||| |||||||| |  ||||||| ||||||||| ||||| ||||    
T  13896906 cagttaactgcagccagttattaaattcttcagcaattaactgccgaggagtcaaaaacatattttactcgtgtgtcttagccttatgcaatgtatcaa 13897004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 30256026 - 30256140
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| || ||||| || ||||||||||  | |||| |||   || ||||||| || |||| |||||| ||||||||||    
T  30256026 tcctcggcagttaactgcagccggttttttaattcctcggcagttaactaccaagggggcatttatgtattttacttgtgtgcctcagctttatgaaatg 30256125  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  30256126 tgtcaacaacaattt 30256140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 41577118 - 41577012
Alignment:
Q  68 cagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaac 167  Q
    |||||||||||| ||  || || ||||||||  ||||||||||||||    |||||||  |||||||||| | | |||||||||||||||||||||||||    
T  41577118 cagttaactgcaaccgattttttaattcatcgacagttaactgtcgaaaaggcaaaaacgtattttatttgtatttctcagccttatgaaatgtgtcaac 41577019  T
Q  168 aacaatt 174  Q
    |||||||    
T  41577018 aacaatt 41577012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 42807663 - 42807737
Alignment:
Q  101 cagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||||| |||||  |||||||| |||||||||| ||||  ||||||||||||||||||| |||||||||||    
T  42807663 cagttaactgccgaggaggcaaaaatgtattttatttgtgtgcatcagccttatgaaatgtgttaacaacaattt 42807737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 2271260 - 2271325
Alignment:
Q  12 tgagatgaataatggatgagag-accttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||||||| ||||||||||| |  ||||||||||||||||||||||||||||| ||||||||||    
T  2271260 tgagatgaattatggatgagaggagattctgccagatttgtagcagaagatcctcggcagttaact 2271325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 24703374 - 24703427
Alignment:
Q  23 atggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||||||||| ||||||||||||||||||||||||||| || ||||||||||    
T  24703374 atggatgagagagcttctgccagatttgtagcagaagatcatcggcagttaact 24703427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 34648150 - 34648218
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccaga--tttgtagcagaagatcctcagcagttaactgc 78  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||| ||||||||||||| || |||||    
T  34648150 tgagatgaataatggatgagagagcttctgccagaattttgtagcataagatcctcagcaatttactgc 34648218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 36134449 - 36134384
Alignment:
Q  12 tgagatgaataatggatgagag-accttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||| |||| |  ||||||||||||||||||||||||||||| ||||||||||    
T  36134449 tgagatgaataatggataagaggagattctgccagatttgtagcagaagatcctcggcagttaact 36134384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 46344987 - 46344874
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||||||  || |||||||| ||  |||||||||| |||||| ||||||| |||||||| || |||| |||| ||||||  |||     
T  46344987 tcctcggcagttaactgcagccgatttttgaattcctcgacagttaactgccgagggggcaaaaaaatattttacttgtgtgcctcaaccttatccaatt 46344888  T
Q  161 tgtcaacaacaatt 174  Q
    |||||||| |||||    
T  46344887 tgtcaacatcaatt 46344874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 49609508 - 49609444
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||||||||||| || ||||| ||| |||||||||||||||||||| ||||| ||||||||||    
T  49609508 tgagatgaataatgaataagagagcttatgccagatttgtagcagaagttcctcggcagttaact 49609444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 4004750 - 4004813
Alignment:
Q  12 tgagatgaataatggatgagag-accttctgccagatttgtagcagaagatcctcagcagttaa 74  Q
    |||||||||||||||||||||| |  ||||||||| ||||||||||||||||||| ||||||||    
T  4004750 tgagatgaataatggatgagaggagattctgccaggtttgtagcagaagatcctcggcagttaa 4004813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 55207692 - 55207799
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||| || ||| |||||||| || ||||||||||| ||| || ||||||   ||||||| |  ||| |||||||| |||||||||||||||    
T  55207692 gcagttaactgcaaccggtttttgaattcttcggcagttaactgccgatggggcaaaagagtattttactcgtgtttctcagccatatgaaatgtgtcaa 55207791  T
Q  167 caacaatt 174  Q
    || |||||    
T  55207792 catcaatt 55207799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 19440306 - 19440192
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| |||  ||||||| || ||||||||||| |||||  |||||| | ||||||| |  |||| |||||| ||||| ||||    
T  19440306 tcctcggcagttaactgcagccggtttatgaattcttcggcagttaactgccgaggaggcaaaagtttattttactcgtgtgcctcagctttatgcaatg 19440207  T
Q  161 tgtcaacaacaattt 175  Q
    | |||||| ||||||    
T  19440206 tatcaacagcaattt 19440192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 41803048 - 41802939
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| || ||||| || ||||||||||| |||| | |||||||  ||||||| |  | | |||||||| |||||||||    
T  41803048 tcctcggcagttaactgcagccggtttttaaattcttcggcagttaactgccgagtgggcaaaaacgtattttactcgtatttctcagccatatgaaatg 41802949  T
Q  161 tgtcaacaac 170  Q
    |||| |||||    
T  41802948 tgtcgacaac 41802939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 49219739 - 49219792
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctc 65  Q
    |||||||||||||||||| |||| |||||| || ||||||||||||||||||||    
T  49219739 tgagatgaataatggatgggagagcttctgtcaaatttgtagcagaagatcctc 49219792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 52570597 - 52570701
Alignment:
Q  69 agttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaaca 168  Q
    |||||||||||| | ||| |||||||| || ||||||||||| |||||| | |||||  ||||||| |  |||| |||||||||||| |||||||||||     
T  52570597 agttaactgcagtcggtttttgaattcttcggcagttaactgccgaggg-gaaaaaacgtattttaatcgtgtgcctcagccttatgcaatgtgtcaacg 52570695  T
Q  169 acaatt 174  Q
    ||||||    
T  52570696 acaatt 52570701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 2426609 - 2426559
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatc 62  Q
    |||||||||||||| |||||||| ||||||||| |||| ||||||||||||    
T  2426609 tgagatgaataatgaatgagagagcttctgccaaatttatagcagaagatc 2426559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 2432973 - 2433079
Alignment:
Q  68 cagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaac 167  Q
    |||||||||| | || |||||||||||| ||  |||||||||| ||||||   ||||   ||||||| |  |||| |||||||||||| |||||||||||    
T  2432973 cagttaactgtatccggttattgaattcctcgacagttaactgccgaggggataaaagcgtattttactcgtgtgcctcagccttatgcaatgtgtcaac 2433072  T
Q  168 aacaatt 174  Q
    |||||||    
T  2433073 aacaatt 2433079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 7837599 - 7837529
Alignment:
Q  104 ttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    |||||||||||||| | |||||  ||  ||| || ||||||||||||||||| ||||||||||||||||||    
T  7837599 ttaactgtcgagggggaaaaaacttaaattacttgtgtgtctcagccttatgcaatgtgtcaacaacaatt 7837529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 11380492 - 11380378
Alignment:
Q  60 atcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaat 159  Q
    |||||| ||||||||||||| |||  | || ||||| || ||||||||||| ||| || |||||||  ||||||| |  ||| ||||||||| |  ||||    
T  11380492 atcctcggcagttaactgcaaccatatttttaattcctcggcagttaactgccgaaggggcaaaaacgtattttactcgtgtttctcagcctaaccaaat 11380393  T
Q  160 gtgtcaacaacaatt 174  Q
    |||||||||||||||    
T  11380392 gtgtcaacaacaatt 11380378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 41805698 - 41805811
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||| ||||||| ||  || ||||| ||  |||||||||| ||||| ||||||||  ||  ||| || |||| |||||||||||| ||||    
T  41805698 tcctcggcagttaattgcagccggtctttaaattcttcgacagttaactgccgaggaagcaaaaacgtaaattacttgtgtgcctcagccttatgcaatg 41805797  T
Q  161 tgtcaacaacaatt 174  Q
    ||||| ||||||||    
T  41805798 tgtcatcaacaatt 41805811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 48250892 - 48251005
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| |   |  ||||| |||||||||||||| |||||| |||||||  |  |||||||||||| | || ||||||| ||||    
T  48250892 tcctcggcagttaactgcagccggaattcaaattcctcagcagttaactgccgagggggcaaaaacgtcatttatttatgtggcacaaccttatgtaatg 48250991  T
Q  161 tgtcaacaacaatt 174  Q
    ||  ||||||||||    
T  48250992 tgggaacaacaatt 48251005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 42756209 - 42756097
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||| || | | || ||||| ||  ||||||||||  ||||| |||||||  ||||||| | |||| ||| | |||||| |||||    
T  42756209 tcctcggcagttaactgcaaccggatttttaattcctcgacagttaactgctgagggggcaaaaacgtattttactcatgtttctgaaccttatcaaatg 42756110  T
Q  161 tgtcaacaacaat 173  Q
    |||||||||||||    
T  42756109 tgtcaacaacaat 42756097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 46402483 - 46402411
Alignment:
Q  14 agatgaataatggatgagag-accttctgccagattt-gtag--cagaagatcctcagcagttaactgcagcc 82  Q
    |||| ||||||||||||||| |  ||||||||||||| ||||  |||||||||||| ||||||||||||||||    
T  46402483 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaactgcagcc 46402411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 43568894 - 43568862
Alignment:
Q  143 tctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||||||| ||||||||||||||||||||    
T  43568894 tctcagccttataaaatgtgtcaacaacaattt 43568862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 48246426 - 48246354
Alignment:
Q  97 tcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaa 169  Q
    |||||||||||||| |||||| ||||||||||  |||| |  | || ||||||||||| |||||||| |||||    
T  48246426 tcagcagttaactgccgagggggcaaaaatatcatttactcgtatgactcagccttatcaaatgtgtaaacaa 48246354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 3395991 - 3395828
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaactgt 111  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||||||||| |||||||||||||  || || || ||||| || |||||||||||     
T  3395991 tgagatgaataatggatgagagagtttctgccatatttgtagcagaagatcctcggcagttaactgcaatcaatttttaaattcctcggcagttaactgc 3395892  T
Q  112 cgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
     ||||| ||||||| |||||||| || |||| |||| |||||||||||||||||| | ||||||    
T  3395891 tgagggggcaaaaacatattttacttgtgtgcctcaaccttatgaaatgtgtcaagagcaattt 3395828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 7168138 - 7168024
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| |||||||| || |||| |||| |||||||| ||||||   ||||||| || |||| |||||||||||||||||    
T  7168138 tcctcggcagttaactgcagccggtttttgaattcttcggcagctaacagtcgagggggcaaaatcgtattttacttgtgtgcctcagccttatgaaatg 7168039  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  7168038 tgtcaacaacaattt 7168024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 18441470 - 18441577
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||| ||  | |||||||||||  || ||||||||||| |||||| |||||||  ||||||| || ||||||||||||||||||||||||||||    
T  18441470 gcagttaactacaatcggttattgaatttctcggcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgaaatgtgtcaa 18441569  T
Q  167 caacaatt 174  Q
    ||||||||    
T  18441570 caacaatt 18441577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 18441389 - 18441455
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgc 78  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  18441389 tgagatgaataatggatgagagagtttctgccagatttgtagcagaagatcctcggcagttaactgc 18441455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 18438684 - 18438571
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| |||||||||||| ||| |||||||||| ||| || ||||||   ||||||| || ||||  ||||||||||| ||||    
T  18438684 tcctcggcagttaactgcagccggttattgaattcctcaacagttaactgccgaaggggcaaaagcgtattttacttgtgtgcatcagccttatgcaatg 18438585  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  18438584 tgtcaacaacaatt 18438571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 41858144 - 41858257
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| |||||||| ||  |||||||||| |||||| |||||||  ||||||| |  ||| |||||||| |||||||||    
T  41858144 tcctcggcagttaactgcagccggtttttgaattcttcgccagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccatatgaaatg 41858243  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  41858244 tgtcaacaacaatt 41858257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 22547568 - 22547498
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagcc 82  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||    
T  22547568 tgagatgaataattgatgagagagcttctgccagatttgtagtagaagatcctcggtagttaactgcagcc 22547498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 41858073 - 41858135
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  41858073 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaact 41858135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 26451601 - 26451541
Alignment:
Q  16 atgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  26451601 atgaataatagatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 26451541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 41855418 - 41855306
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||||||  || |||||||| ||  |||||||||| |||||  |||||||  ||||||| | |||| |||||||| |||||||||    
T  41855418 tcctcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgaggaggcaaaaacgtattttactcatgtttctcagccatatgaaatg 41855319  T
Q  161 tgtcaacaacaat 173  Q
    |||||||||||||    
T  41855318 tgtcaacaacaat 41855306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 22577708 - 22577601
Alignment:
Q  68 cagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaac 167  Q
    |||||||||||| ||| || |||||||| |||||| ||||||| ||||||| ||||||  |||||||||| ||||| || ||||| |||||||| |||||    
T  22577708 cagttaactgcaaccaatttttgaattcctcagcaattaactgccgagggaacaaaaacgtattttatttgtgtgtatctgccttgtgaaatgtatcaac 22577609  T
Q  168 aacaattt 175  Q
    ||| ||||    
T  22577608 aacgattt 22577601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 41274717 - 41274653
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||| ||||||||||    
T  41274717 tgagatgaataatggatgagagagcttctgccagatttatagtagaagattctcggcagttaact 41274653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 42602510 - 42602400
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||| || ||| |||||||| || ||||||||||| |||  || ||||||| ||||||| |  ||| |||||||| ||||||| |    
T  42602510 tcctcggcagttaactgcatccggtttttgaattcttcggcagttaactgccgatagaacaaaaatgtattttactcgtgtttctcagccatatgaaacg 42602411  T
Q  161 tgtcaacaaca 171  Q
    |||||||||||    
T  42602410 tgtcaacaaca 42602400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 37779773 - 37779707
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagcc 82  Q
    ||||||||||||||||||||  |||||| |||||||||||||||| ||||||  |||||||||||||||    
T  37779773 agatgaataatggatgagag--cttctgtcagatttgtagcagaatatcctcgacagttaactgcagcc 37779707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 38872953 - 38873066
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| || ||||| || | ||||||||| ||||||  ||||||||| ||||| || ||||  ||||||||||| ||||    
T  38872953 tcctcggcagttaactgcagccggtttttaaattcctcggtagttaactgacgaggggacaaaaatattttttacttgtgtgcatcagccttatgcaatg 38873052  T
Q  161 tgtcaacaacaatt 174  Q
    ||||  ||||||||    
T  38873053 tgtcgtcaacaatt 38873066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 38871884 - 38871741
Alignment:
Q  26 gatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaa 125  Q
    ||||||||| || ||||||||||||||||||||||||||  |||||||||||||  |  ||  ||||||| ||  || ||||||  | | | ||||||||    
T  38871884 gatgagagagctcctgccagatttgtagcagaagatccttggcagttaactgcaatcgatttatgaattcctcgacaattaactaccaatgaagcaaaaa 38871785  T
Q  126 tatattttatttatgtgtctcagccttatgaaatgtgtcaacaa 169  Q
      ||||||| || |||| ||||  ||||||||||||||||||||    
T  38871784 cgtattttacttgtgtgcctcaatcttatgaaatgtgtcaacaa 38871741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 42602583 - 42602521
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||| | ||| || |||||||||| |||||||||||| ||||||||||    
T  42602583 agatgaataatggatgagacaacttatgtcagatttgtatcagaagatcctcggcagttaact 42602521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 35389558 - 35389445
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||  ||| |||||||  || ||||||||||||||| |  |||||||  ||  ||| |  | ||||||||||||||| ||||    
T  35389558 tcctcggcagttaactgcagctggtttttgaatttctcggcagttaactgtcgaagaggcaaaaacgtaaattactcgtatgtctcagccttatgcaatg 35389459  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  35389458 tgtcaacaacaatt 35389445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 35940489 - 35940408
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtg 142  Q
    ||||| |||||||||||||||   ||||||||||| |||||| ||| ||||||| |  |||||||| |||||||||||||||    
T  35940489 tcctcggcagttaactgcagctgattattgaattcctcagcacttagctgtcgaagaggcaaaaatgtattttatttatgtg 35940408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 24860507 - 24860448
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagt 71  Q
    ||||||||||||| ||||||||| |||||| || |||| ||||||||||||||| |||||    
T  24860507 tgagatgaataatagatgagagagcttctgtcaaatttatagcagaagatcctccgcagt 24860448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 5300756 - 5300684
Alignment:
Q  102 agttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    ||||||||||||||||  ||||||  ||||||| |  ||| ||||| |||||| |||||||||||||||||||    
T  5300756 agttaactgtcgaggggacaaaaacgtattttactcgtgtttctcaaccttatcaaatgtgtcaacaacaatt 5300684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 39751123 - 39751011
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| |  |||||||| |||||||| || | |||| |||||||  ||||||| |  |||| |||| | ||||| ||||    
T  39751123 tcctcggcagttaactgcagccggtt-tcaaattcatcggcagttaattgccaagggggcaaaaacgtattttactcgtgtgcctcaacattatgcaatg 39751025  T
Q  161 tgtcaacaacaatt 174  Q
    |||||||| |||||    
T  39751024 tgtcaacagcaatt 39751011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 40077325 - 40077386
Alignment:
Q  113 gagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    ||||| |||||||  ||||||| |  ||| |||||||||||| |||||||||||||||||||    
T  40077325 gagggggcaaaaacgtattttactcgtgtttctcagccttatcaaatgtgtcaacaacaatt 40077386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 51369 - 51341
Alignment:
Q  147 agccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||||||||||||||||||||||||    
T  51369 agccttatgaaatgtgtcaacaacaattt 51341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 4866407 - 4866371
Alignment:
Q  139 tgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||||||||||||| |||||| |||||||||||    
T  4866407 tgtgtctcagccttatgatatgtgtgaacaacaattt 4866371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 18205830 - 18205738
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaat 159  Q
    |||||||||||||||| ||| |||||||| || ||||||||| | |||||  | |||||  ||||||| |  ||| |||||||||||| ||||    
T  18205830 gcagttaactgcagccggtttttgaattcttcggcagttaaccgccgaggtggtaaaaacgtattttactcgtgtttctcagccttataaaat 18205738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 43690086 - 43690162
Alignment:
Q  91 aattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaac 167  Q
    |||||||||| ||||||||  |||| |||||||||  ||||||| || | |   |||||||||||||||||||||||    
T  43690086 aattcatcagtagttaactaccgagagagcaaaaacgtattttacttgtatacttcagccttatgaaatgtgtcaac 43690162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 3603179 - 3603284
Alignment:
Q  69 agttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaaca 168  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||  ||||||| ||||||| |||||||||||| ||||||||||||    
T  3603179 agttaactgcagccagttattgaattcttcggcagttaactgtcgagggagcaaaaacgtattttacttatgtgcctcagccttatgcaatgtgtcaaca 3603278  T
Q  169 acaatt 174  Q
    ||||||    
T  3603279 acaatt 3603284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 42865754 - 42865906
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcg 113  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| || ||| |||||||| ||  | |||||||| ||    
T  42865754 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcaattaactgcaaccggtttttgaattcttcgtcggttaactgccg 42865853  T
Q  114 agggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||| |||||  ||||||| |  ||| | | |||| |||||||||||||||    
T  42865854 agggagaaaaaacttattttactcgtgtttttaagccatatgaaatgtgtcaa 42865906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 1398645 - 1398540
Alignment:
Q  70 gttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaa 169  Q
    |||||||||| || |||||||||||| || ||||||||||||||| ||||||||| | ||||||| || ||||||||| ||||||| |||||||||||||    
T  1398645 gttaactgcaaccggttattgaattcctcggcagttaactgtcgaaggagcaaaagtgtattttacttctgtgtctcaaccttatgtaatgtgtcaacaa 1398546  T
Q  170 caattt 175  Q
    ||||||    
T  1398545 caattt 1398540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 20192403 - 20192290
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||||||  ||||||||||| |||||||||||||| ||| || ||||||   ||||||| || |||| |||||||||||||||||    
T  20192403 tcctcggcagttaactgcagccgattattgaattcttcagcagttaactgacgaaggggcaaaatcgtattttacttgtgtgcctcagccttatgaaatg 20192304  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  20192303 tgtcaacaacaatt 20192290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 542738 - 542802
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  542738 tgagatgaataatggatgagagaacttctgccagatttgtagcagaagatcctcggcagttaact 542802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 34682307 - 34682193
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| |||||||| ||  |||||||||||| |||||||||||   ||||||| || ||   |||||||||||||||||    
T  34682307 tcctcggcagttaactgcagccggtttttgaattcctcgacagttaactgtcaagggagcaaaagcgtattttacttgtgaacctcagccttatgaaatg 34682208  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  34682207 tgtcaacaacaattt 34682193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 18307379 - 18307315
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||    
T  18307379 tgagatgaataatggatgagagggcttctgccagatttgtagcagaagatcctcggcagttaact 18307315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 35564386 - 35564322
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  35564386 tgaggtgaataatggatgagagagcttatgccagatttgtagcagaagatcctcagcagttaact 35564322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 18538358 - 18538472
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| |||||||| ||  || ||||||| |||||| ||||||   ||||||| || |||| |||||||| ||||||||    
T  18538358 tcctcggcagttaactgcagccggtttttgaattcctcgacaattaactgccgagggggcaaaatcgtattttacttgtgtgcctcagcctaatgaaatg 18538457  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  18538458 tgtcaacaacaattt 18538472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 19228675 - 19228783
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||| || ||| || |||||||| ||||||||||| |||||| |||   |  ||||||| || |||||||||||||||| |||||||||||    
T  19228675 gcagttaactgcatccggttttttaattcatcggcagttaactgccgagggggcatttacgtattttacttgtgtgtctcagccttatcaaatgtgtcaa 19228774  T
Q  167 caacaattt 175  Q
    |||||||||    
T  19228775 caacaattt 19228783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 25497636 - 25497572
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  25497636 tgagatgaataatggatgagagagcttctgcctgatttgtagcagaagattctcggcagttaact 25497572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 18310050 - 18310157
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||||||| | |||||||||||| ||  ||||||||||  ||||  |||||||  ||||||| || |||| |||||||||||| ||||||||||    
T  18310050 gcagttaactgcagtcggttattgaattcctcgacagttaactgctgaggaggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaa 18310149  T
Q  167 caacaatt 174  Q
    ||||||||    
T  18310150 caacaatt 18310157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 20200171 - 20200284
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||||   |||||||||||  |   |||||||||| ||| || |||||||  |||||||||| |||| |||||||||||| ||||    
T  20200171 tcctcggcagttaactgcagttggttattgaatttcttgacagttaactgccgatggggcaaaaacgtattttatttgtgtgcctcagccttatgcaatg 20200270  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  20200271 tgtcaacaacaatt 20200284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 3600381 - 3600273
Alignment:
Q  67 gcagttaactgcagccagttattg-aattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtca 165  Q
    |||||||||||||||  ||||||  ||||  || ||||||||||| |||||| ||||||| |||||||| || |||| |||| | |||||||||||||||    
T  3600381 gcagttaactgcagctggttattataattattcggcagttaactgccgagggggcaaaaacatattttacttgtgtggctcaactttatgaaatgtgtca 3600282  T
Q  166 acaacaatt 174  Q
    |||||||||    
T  3600281 acaacaatt 3600273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 24053224 - 24053116
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||||||| | ||| |||||||  || ||| ||||||| |||| || ||||||  |||||||||||||||||||  |||||| | |||||||||    
T  24053224 gcagttaactgcagacggtttttgaattactcggcatttaactgccgagagaacaaaaacgtattttatttatgtgtctcgaccttatcatatgtgtcaa 24053125  T
Q  167 caacaattt 175  Q
    |||||||||    
T  24053124 caacaattt 24053116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 11346133 - 11346068
Alignment:
Q  12 tgagatgaataatggatgagag-accttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||||||||||  |||||||||    
T  11346133 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcgacagttaact 11346068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 3600462 - 3600398
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||||||||||| |||| ||| |||||| ||||||||||||||||||||||| || |||||||    
T  3600462 tgagatgaataatgcatgaaagaacttctgtcagatttgtagcagaagatcctcggctgttaact 3600398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 8702221 - 8702284
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaa 124  Q
    |||||||||||||||||||| ||| | || ||||| || |||||||||||||||||||||||||    
T  8702221 tcctcagcagttaactgcagtcagatttttaattcctcggcagttaactgtcgagggagcaaaa 8702284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 20192464 - 20192414
Alignment:
Q  26 gatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  20192464 gatgagagagcttctgccagatttgtagcagaagatcctcggcatttaact 20192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 35567090 - 35567156
Alignment:
Q  101 cagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaac 167  Q
    |||||||||| |||| ||||||||| |||||||| || |||| |||||||| |||||||||||||||    
T  35567090 cagttaactgccgagagagcaaaaacatattttacttgtgtgcctcagcctgatgaaatgtgtcaac 35567156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 8537291 - 8537226
Alignment:
Q  12 tgagatgaataatggatgagag-accttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||||||||||||||||||| |  ||||| |||||||||||||||| |||||| ||||||||||    
T  8537291 tgagatgaataatggatgagaggagattctggcagatttgtagcagaacatcctcggcagttaact 8537226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 1401435 - 1401478
Alignment:
Q  128 tattttatttatgtgtctcagccttatgaaatgtgtcaacaaca 171  Q
    ||||||| || |||||||||||||||||||||||||||||||||    
T  1401435 tattttacttgtgtgtctcagccttatgaaatgtgtcaacaaca 1401478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 512793 - 512875
Alignment:
Q  91 aattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaat 173  Q
    |||||||| |||||||||||||||||  |||||||  || |||| || ||| | ||| |||||| ||||||||||||||||||    
T  512793 aattcatcggcagttaactgtcgaggaggcaaaaacgtactttacttgtgtttatcaaccttatcaaatgtgtcaacaacaat 512875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 42537212 - 42537138
Alignment:
Q  100 gcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    ||||||||||| ||| || |||||||| ||||||| |  ||| |||||||||||| |||||||| ||||||||||    
T  42537212 gcagttaactgccgatggggcaaaaatgtattttactcgtgtttctcagccttatcaaatgtgtgaacaacaatt 42537138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 1401388 - 1401428
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgta 52  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  1401388 tgagatgaataatggatgagagagcttctgctagatttgta 1401428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 24050021 - 24049973
Alignment:
Q  127 atattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    ||||||||||||||||||||  |||||| | ||||||||||||||||||    
T  24050021 atattttatttatgtgtctcgaccttatcatatgtgtcaacaacaattt 24049973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 33993324 - 33993216
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||| ||||| ||| |||||||  || ||||||||||  |||||| |||||||  ||||||| |  | | ||||| ||||||||||||||||||    
T  33993324 gcagttaactacagccggtttttgaatttttcggcagttaacttccgagggggcaaaaacgtattttactcgtatttctcaaccttatgaaatgtgtcaa 33993225  T
Q  167 caacaattt 175  Q
     | ||||||    
T  33993224 aagcaattt 33993216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 172
Target Start/End: Original strand, 33995171 - 33995282
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||| |||| ||  || |||||||  || ||||||||||||||||||   |||| | ||||||| || |||| |||| |||||| ||||     
T  33995171 tcctcggcagttaattgcatccgatttttgaatttctcggcagttaactgtcgaggggataaaattgtattttacttgtgtgcctcaaccttataaaata 33995270  T
Q  161 tgtcaacaacaa 172  Q
    ||||||||||||    
T  33995271 tgtcaacaacaa 33995282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 39743201 - 39743284
Alignment:
Q  91 aattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    ||||| || |||||||||||||||||| ||||||  |||||||| |  |||| | ||||||||| |||||||  ||||||||||    
T  39743201 aattcctcggcagttaactgtcgagggggcaaaatcatattttactagtgtggcacagccttatcaaatgtgggaacaacaatt 39743284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 41201778 - 41201675
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| |||||||||||| ||  || |||| ||||||| |  |||||   ||||||| |  |||| |||||||||||| ||||    
T  41201778 tcctcggcagttaactgcagccggttattgaattcctcgacaattaattgtcgagaggacaaaatcgtattttactcgtgtgcctcagccttatgtaatg 41201679  T
Q  161 tgtc 164  Q
    ||||    
T  41201678 tgtc 41201675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 41799796 - 41799903
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||||| || | |  ||||| ||||||||||||||||||||| |||||||  ||  ||| |  |||||| ||| ||||| |||||||  ||    
T  41799796 gcagttaactgcagctagatttctaattcctcagcagttaactgtcgagggggcaaaaaagtaaattactcgtgtgtcacagtcttatcaaatgtgggaa 41799895  T
Q  167 caacaatt 174  Q
    ||||||||    
T  41799896 caacaatt 41799903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 38968145 - 38968039
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| | | ||  |||| || | ||||||||  ||| ||| ||||||  ||||||| |||||| | ||||||||||||||||    
T  38968145 tcctcggcagttaactgcagccggattttttattcctcggtagttaactaccgaaggatcaaaaacgtattttacttatgtttttcagccttatgaaatg 38968046  T
Q  161 tgtcaac 167  Q
    | |||||    
T  38968045 tatcaac 38968039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 25499910 - 25500026
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgt--gtctcagccttatgaaa 158  Q
    ||||| ||||||||| ||| || ||| |||||||| ||   ||||||||| |||||| ||||||   ||||||| || |||  | |||||||||||| ||    
T  25499910 tcctcggcagttaaccgcaaccggtttttgaattcctcgatagttaactgccgagggggcaaaagcgtattttacttgtgttcgcctcagccttatgtaa 25500009  T
Q  159 tgtgtcaacaacaattt 175  Q
    |||||||||| ||||||    
T  25500010 tgtgtcaacaccaattt 25500026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 1397379 - 1397487
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||||||||| | | |  ||||| |||||||||||||| |||||| |||||||| ||  ||| |  |||| | || |||||| |||||||  ||    
T  1397379 gcagttaactgcagccggatttctaattcctcagcagttaactgccgagggggcaaaaatgtaaattactcgtgtgccacaaccttatcaaatgtgggaa 1397478  T
Q  167 caacaattt 175  Q
    |||||||||    
T  1397479 caacaattt 1397487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 21188374 - 21188473
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaactgt 111  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| || ||||||||||||    
T  21188374 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgcagccggtttttgaattcctcggcagttaactgt 21188473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 9494829 - 9494943
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| || ||||| || ||||||||||| |||||| ||| | |  ||||||| || |||| |||||||||||||||||    
T  9494829 tcctcggcagttaactgcagccggttttttaattcctcggcagttaactgccgagggggcatatacctattttacttgtgtgcctcagccttatgaaatg 9494928  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  9494929 tgtcaacaacaattt 9494943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 30355189 - 30355251
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  30355189 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 30355251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 48316296 - 48316394
Alignment:
Q  74 actgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaa 172  Q
    ||||||||| ||||||||| || || ||||||||||||| |||| |||||||  ||||||| || |||||||||||||||||||||||| |||||||||    
T  48316296 actgcagccggttattgaagtcttcggcagttaactgtcaagggggcaaaaacttattttacttgtgtgtctcagccttatgaaatgtgccaacaacaa 48316394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 48314715 - 48314611
Alignment:
Q  69 agttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaaca 168  Q
    |||||||||||||| |||||||||||| || ||||||||||| |||||| |||||||| ||||||| || |||  |||| ||||||| ||||||||||||    
T  48314715 agttaactgcagccggttattgaattcctcggcagttaactgccgaggg-gcaaaaatgtattttacttgtgtacctcaaccttatgcaatgtgtcaaca 48314617  T
Q  169 acaatt 174  Q
    ||||||    
T  48314616 acaatt 48314611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 21185663 - 21185556
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||| ||||| |||||||||||| || ||||||||||| |||||  ||||||   ||||||| |||||||||||| | ||||| ||||||||||    
T  21185663 gcagttaactacagccggttattgaattcttcggcagttaactgccgaggaggcaaaatcgtattttacttatgtgtctcatcattatgcaatgtgtcaa 21185564  T
Q  167 caacaatt 174  Q
    ||||||||    
T  21185563 caacaatt 21185556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 34139996 - 34139926
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagcc 82  Q
    ||||||||||||||||| ||||| ||||||||||||||||||  |||||||||| ||||||||||||||||    
T  34139996 tgagatgaataatggataagagagcttctgccagatttgtagaggaagatcctcggcagttaactgcagcc 34139926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 48269766 - 48269618
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaactgt 111  Q
    ||||||||||||||||||||||| ||| || ||||||||||||||||||||||| || |             |||||||||||| || |||||||||||     
T  48269766 tgagatgaataatggatgagagaacttttgtcagatttgtagcagaagatcctcggccg-------------gttattgaattcttcggcagttaactgc 48269680  T
Q  112 cgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    |||| | | ||||| |||||||| || |||| ||||||||||| |||||||||||||||||||    
T  48269679 cgagaggg-aaaaacatattttacttgtgtgcctcagccttataaaatgtgtcaacaacaatt 48269618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 36392175 - 36392062
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||| ||| ||  || |||||||| ||| ||||||||||||||||| |||||||  ||||||| || |||| || ||||||||| ||||    
T  36392175 tcctcggcagttaaccgcaaccgatttttgaattcctcaacagttaactgtcgagggggcaaaaacgtattttacttgtgtgcctaagccttatgtaatg 36392076  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  36392075 tgtcaacaacaatt 36392062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 41047902 - 41047838
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||||||||| ||||||||||    
T  41047902 tgagatgaataatggatgagagagcttcctccagatttgtagcagaagatcctcggcagttaact 41047838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 46863292 - 46863356
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||    
T  46863292 tgagatgaataatggatgaaagagcttctgccagatttgtagcagaagatcttcggcagttaact 46863356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 10225874 - 10225981
Alignment:
Q  69 agttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatg-aaatgtgtcaac 167  Q
    |||||||| ||| || || ||| |||||||  ||||||||||||||||  ||||||| |||||||| |||||||  ||||||||||| ||||||||||||    
T  10225874 agttaacttcagtcaatttttgcattcatcgacagttaactgtcgaggaggcaaaaacatattttacttatgtgcttcagccttatgaaaatgtgtcaac 10225973  T
Q  168 aacaattt 175  Q
    ||||||||    
T  10225974 aacaattt 10225981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 28980202 - 28980309
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||| || | |||||||||| || |||| ||||||  ||||| |||||||  ||||||| |  ||||||||||||||||| ||||||||||    
T  28980202 gcagttaactgcatccggatattgaattcttcggcagctaactgctgagggggcaaaaacgtattttactcgtgtgtctcagccttatgcaatgtgtcaa 28980301  T
Q  167 caacaatt 174  Q
    ||||||||    
T  28980302 caacaatt 28980309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 46863373 - 46863480
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||||||||| ||| || ||||  || ||||||||||| ||| || |||||||  ||||||| || ||||||||||||||||| |||| |||||    
T  46863373 gcagttaactgcagccggtttttcaatttctcggcagttaactgccgatggggcaaaaacgtattttacttgtgtgtctcagccttatgcaatgcgtcaa 46863472  T
Q  167 caacaatt 174  Q
    ||||||||    
T  46863473 caacaatt 46863480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 42682119 - 42682057
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaa 74  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||    
T  42682119 tgagatgaataatggatgagagaacttatgctagatttgtagcagaagatcctcggcagttaa 42682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 28980123 - 28980184
Alignment:
Q  15 gatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||    
T  28980123 gatgaataatggatgagagagcttctgtcagatttgtagcagaaaatcctcggcagttaact 28980184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 30355262 - 30355375
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||||||  || |||||||| |||||| ||||||| |||||| ||||||   ||||||| |  ||| |||||| | |||||||||    
T  30355262 tcctcggcagttaactgcagccgatttttgaattcttcagcaattaactgccgagggggcaaaagcgtattttactcgtgtttctcagtcatatgaaatg 30355361  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  30355362 tgtcaacaacaatt 30355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 28115480 - 28115544
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||| |||||||||    
T  28115480 tgagatgaataatggatgagagagcttatgctagatttgtagcagaagaccctcaacagttaact 28115544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 36394886 - 36394950
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||| ||||| |||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  36394886 tgagattaataacggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaact 36394950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 45361693 - 45361586
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||||||||| | | || ||||| ||  |||||||||| |||||||||||||| |||||||| | |||| ||| |||||||| |||||||  ||    
T  45361693 gcagttaactgcagccggatttttaattcctcgtcagttaactgccgagggagcaaaaacatattttactcatgtttcttagccttatcaaatgtgggaa 45361594  T
Q  167 caacaatt 174  Q
    ||||||||    
T  45361593 caacaatt 45361586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 17838776 - 17838711
Alignment:
Q  12 tgagatgaataatggatgagag-accttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||||||| || ||||||||||    
T  17838776 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcgtcggcagttaact 17838711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 27453617 - 27453730
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| | | || ||||| || ||||||||||| |||||| |||||    ||||||| |||||| ||| |||||||| |||||    
T  27453617 tcctcggcagttaactgcagccggatttttaattcctcggcagttaactgccgagggggcaaagtcgtattttacttatgtttctaagccttatcaaatg 27453716  T
Q  161 tgtcaacaacaatt 174  Q
    ||| ||||||||||    
T  27453717 tgtgaacaacaatt 27453730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 41047827 - 41047715
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||| || ||  ||||| ||||| || ||||||||||  ||||  ||||||||| ||||||||||||||| | ||| |||||| ||||    
T  41047827 tcctcggcagttaactacacccgattattaaattcttctgcagttaactaccgaga-agcaaaaatgtattttatttatgtgccgcagtcttatgcaatg 41047729  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  41047728 tgtcaacaacaatt 41047715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 40587786 - 40587722
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||  ||||||| ||||| ||||||||| ||||||||||    
T  40587786 tgagatgaataatggatgagagagcttctttcagatttatagcataagatcctcggcagttaact 40587722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 37340346 - 37340239
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||| || ||| |||||||| ||  |||||||||||||| |   ||||||  ||||||||||||||| || || |||||| ||||||||||    
T  37340346 gcagttaactgcaaccggtttttgaattcctcgacagttaactgtcgaagagacaaaaacgtattttatttatgtgccttagtcttatgtaatgtgtcaa 37340247  T
Q  167 caacaatt 174  Q
    || |||||    
T  37340246 catcaatt 37340239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 10708331 - 10708401
Alignment:
Q  99 agcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaa 169  Q
    |||||||||||| ||| || |||||||||||||||| |  ||| |||||| ||||||||||||||||||||    
T  10708331 agcagttaactgccgaaggggcaaaaatatattttactcgtgtttctcagtcttatgaaatgtgtcaacaa 10708401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 28112852 - 28112778
Alignment:
Q  101 cagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||||| |||| | ||||||   ||||||| || ||||||||| |||||||||||||||||||||||||||    
T  28112852 cagttaactgccgagagggcaaaagcgtattttacttgtgtgtctcaaccttatgaaatgtgtcaacaacaattt 28112778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 34622542 - 34622436
Alignment:
Q  68 cagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaac 167  Q
    ||||||||||||| | |||  | ||||| || ||||||||||||| |||| |||||||  ||  ||| || |||| |||||||||||| |||||||||||    
T  34622542 cagttaactgcagtcggtttcttaattcctctgcagttaactgtcaagggggcaaaaacgtaaattacttgtgtgcctcagccttatgcaatgtgtcaac 34622443  T
Q  168 aacaatt 174  Q
    |||||||    
T  34622442 aacaatt 34622436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 41049212 - 41049324
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||||||  ||||||||||| ||  |||||||||  ||| | | |||||   ||||||| |||||||  ||||||||||| ||||    
T  41049212 tcctcggcagttaactgcagccgattattgaattcttcgacagttaactaccgaagaa-caaaagcgtattttacttatgtgcatcagccttatgcaatg 41049310  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  41049311 tgtcaacaacaatt 41049324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 47060976 - 47060864
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||| |||||  || |||||||| ||  |||||||||| |||||| |||||||  ||||||| || | || ||||||||||||||||     
T  47060976 tcctcggcagttaactacagccgatt-ttgaattcctcgacagttaactgccgagggggcaaaaacgtattttacttgtatgcctcagccttatgaaata 47060878  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||| ||||    
T  47060877 tgtcaacaataatt 47060864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 47776382 - 47776281
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||||| | || ||||  || |||||||||||||||||| ||||||   ||||||| |  ||| |||||||||||| |||||    
T  47776382 tcctcggcagttaactgcagccagatttttaatttctcggcagttaactgtcgagggggcaaaatcgtattttactcgtgtttctcagccttatcaaatg 47776283  T
Q  161 tg 162  Q
    ||    
T  47776282 tg 47776281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 10705292 - 10705184
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||||||  || || ||||  || ||||||||||| | |||| | |||||| ||||||| || |||| || ||||||||||||| ||||||    
T  10705292 gcagttaactgcagccgattttttaatttctcggcagttaactgccaaggggggaaaaatgtattttacttgtgtgccttagccttatgaaatatgtcaa 10705193  T
Q  167 caacaattt 175  Q
     ||||||||    
T  10705192 taacaattt 10705184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 43686859 - 43686919
Alignment:
Q  16 atgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||| ||| || |||||||||||||||| || ||| ||||||||||    
T  43686859 atgaataatggatgagagagcttatgtcagatttgtagcagaaaattctcggcagttaact 43686919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 45364168 - 45364227
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagt 71  Q
    ||||||||||||| ||| ||||| ||||| ||||||||||||| |||||||||| |||||    
T  45364168 tgagatgaataatagataagagagcttctaccagatttgtagccgaagatcctcggcagt 45364227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 47673018 - 47673065
Alignment:
Q  128 tattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  47673018 tattttatttgtgtgtctcagccttatgaaatatgtcaacatcaattt 47673065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 36186496 - 36186609
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||| || ||| | |||||| || ||| ||||||| |||||| ||||||   ||||||| |  |||| | |||||||||| ||||    
T  36186496 tcctcggcagttaactgcaaccggtt-tcgaattcctcggcatttaactgccgagggggcaaaagcgtattttactcgtgtgacacagccttatgcaatg 36186594  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  36186595 tgtcaacaacaattt 36186609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 40590553 - 40590627
Alignment:
Q  100 gcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    ||||||||||| |||||| |||||||  |||||||||  ||| |||||||||||| |||||||  ||||||||||    
T  40590553 gcagttaactgccgagggggcaaaaacgtattttattcgtgtttctcagccttatcaaatgtgggaacaacaatt 40590627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 42682044 - 42681931
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||  ||| |||||||  ||| | |||||||  |||||   |||||||  |||||| ||||||| ||||||||||| ||||     
T  42682044 tcctcggcagttaactgcagctggtttttgaatttctcaaccgttaactaccgaggagacaaaaatgcattttacttatgtgcctcagccttataaaata 42681945  T
Q  161 tgtcaacaacaatt 174  Q
    |||||| |||||||    
T  42681944 tgtcaagaacaatt 42681931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 46860553 - 46860457
Alignment:
Q  69 agttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtca 165  Q
    |||||||||||| | ||| || ||||| ||  |||||||||| |||||| ||||||   ||||||| || |||| |||||||||||| |||||||||    
T  46860553 agttaactgcagtcggtttttcaattcctcgacagttaactgccgagggggcaaaagcgtattttacttgtgtgcctcagccttatgtaatgtgtca 46860457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 19044314 - 19044231
Alignment:
Q  91 aattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    ||||| || ||| ||||||| |||| || ||||||  ||||||| | ||||| |||||||||||| ||||||||||||| ||||    
T  19044314 aattcctcggcaattaactgccgagtgaacaaaaacgtattttactcatgtgcctcagccttatgcaatgtgtcaacaataatt 19044231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 20710322 - 20710405
Alignment:
Q  91 aattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    ||||| || ||| ||||||| |||| || ||||||  ||||||| | ||||| |||||||||||| ||||||||||||| ||||    
T  20710322 aattcctcggcaattaactgccgagtgaacaaaaacgtattttactcatgtgcctcagccttatgcaatgtgtcaacaataatt 20710405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 42684226 - 42684292
Alignment:
Q  101 cagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaac 167  Q
    |||||||||| ||| ||| ||||||  ||||||| || ||||||||||||||||| ||| |||||||    
T  42684226 cagttaactgccgatggaacaaaaacgtattttacttgtgtgtctcagccttatgcaatatgtcaac 42684292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 48316259 - 48316295
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttg 50  Q
    |||| |||||||||||||||| |||||||||||||||    
T  48316259 agattaataatggatgagagagcttctgccagatttg 48316295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 19054101 - 19053995
Alignment:
Q  69 agttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaaca 168  Q
    |||||||||||||| ||| |||||||| || |||||||||||||||||| |||||||  ||||||| |  ||| ||||||||||||||||||||||||||    
T  19054101 agttaactgcagccggtttttgaattcctcggcagttaactgtcgagggggcaaaaacgtattttactcgtgtttctcagccttatgaaatgtgtcaaca 19054002  T
Q  169 acaattt 175  Q
    |||||||    
T  19054001 acaattt 19053995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 27487614 - 27487684
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagcc 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  27487614 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgcagcc 27487684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 14174859 - 14174942
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattc 95  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||  || ||||||||    
T  14174859 tgagatgaataatggatgagagagcttctgccagatttttagcagaagatcctcggcagttaactgcagccgatttttgaattc 14174942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 46973254 - 46973140
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| |||||||| || ||||||||||| | |||| ||||||   ||||||| || ||||||||||||| ||||||||    
T  46973254 tcctcggcagttaactgcagccggtttttgaattcctcggcagttaactgccaagggggcaaaatcgtattttacttgtgtgtctcagcctaatgaaatg 46973155  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  46973154 tgtcaacaacaattt 46973140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 29763167 - 29763231
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  29763167 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 29763231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 42572705 - 42572769
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  42572705 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 42572769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 13173885 - 13173772
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| || ||||||||||||| ||| ||||||||  ||||||||||||| |||||| ||||||   ||||||| || |||| |||||||||||||||||    
T  13173885 tcctcggctgttaactgcagccggtttttgaattcc-cagcagttaactgccgagggggcaaaatagtattttacttgtgtgcctcagccttatgaaatg 13173787  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  13173786 tgtcaacaacaattt 13173772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 11183236 - 11183123
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| | | || ||||| |||||||||||||||| ||||||||||||  ||||||| |  | | |||||||||||| |||||    
T  11183236 tcctcggcagttaactgcagccggatttttaattcctcagcagttaactgtcaagggagcaaaaacgtattttactcgtatttctcagccttatcaaatg 11183137  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  11183136 tgtcaacaacaatt 11183123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 35526983 - 35527150
Alignment:
Q  12 tgagatgaataatggatgaga--gaccttctgccagattt--gtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaa 107  Q
    |||||||||||||||||||||  ||  |||||||| ||||  ||||||||||||||||  ||||||||||||||| ||| |||| ||| || ||| ||||    
T  35526983 tgagatgaataatggatgagatagaggttctgccatatttttgtagcagaagatcctctacagttaactgcagcctgtttttgatttcttcggcaattaa 35527082  T
Q  108 ctgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    ||| | ||   |||||||  ||||||| || |||| ||||||||||||||||||||||| | ||||||    
T  35527083 ctgccaagaaggcaaaaacgtattttacttgtgtgcctcagccttatgaaatgtgtcaagagcaattt 35527150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 44596960 - 44596893
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgca 79  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||||||||||||    
T  44596960 tgagatgaataatggatgagagagtttctgccaaatttgtagcagaagatactcagcagttaactgca 44596893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 41804056 - 41804170
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||| | ||| |||||||| || ||||||||||| ||| || ||||||   ||||||| || |||| ||||||||||| |||||    
T  41804056 tcctcggcagttaactgcagtcggtttttgaattcctcggcagttaactgccgaaggggcaaaagcgtattttacttgtgtgcctcagccttataaaatg 41804155  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  41804156 tgtcaacaacaattt 41804170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 49927451 - 49927513
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  49927451 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaact 49927513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 26637204 - 26637257
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctc 65  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26637204 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctc 26637257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 36908627 - 36908514
Alignment:
Q  62 cctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgt 161  Q
    |||| |||||||||||||||| ||| |||||||| ||  |||||||||| |||||  |||||||| ||||||| || |||| |||| |||||| ||||||    
T  36908627 cctcggcagttaactgcagccggtttttgaattcttcgacagttaactgccgaggaggcaaaaatgtattttacttgtgtgcctcatccttataaaatgt 36908528  T
Q  162 gtcaacaacaattt 175  Q
    ||||||| ||||||    
T  36908527 gtcaacatcaattt 36908514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 46141832 - 46141719
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| |||||||||||| || ||||||||||| |||| | ||||||   ||||||| || |||  |||||||||||| |||     
T  46141832 tcctcggcagttaactgcagccggttattgaattcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtacctcagccttatgcaata 46141733  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  46141732 tgtcaacaacaatt 46141719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 49426813 - 49426742
Alignment:
Q  12 tgagatgaataatggatgagag-accttctgccagatttgtagcagaagatcctcagcagttaactgcagcc 82  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||||||| |||||||| |||||||    
T  49426813 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcggcagttaattgcagcc 49426742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 13972112 - 13972001
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| || ||||||||||||||||| || ||||| || ||||| ||||| ||| || |||||||  ||||||| || ||| ||||||||||||||||||    
T  13972112 tcctcggctgttaactgcagccagttttt-aattcctcggcagt-aactgccgaaggggcaaaaacgtattttacttgtgtttctcagccttatgaaatg 13972015  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  13972014 tgtcaacaacaatt 13972001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 13972187 - 13972134
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctc 65  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  13972187 tgagatgaataatagatgagagagcttctgccagatttgtagcagaagatcctc 13972134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 6434873 - 6434809
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  6434873 tgagatgaataatggatgagagtgcttctaccagatttgtagcagaagatccttggcagttaact 6434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 13178155 - 13178267
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    |||||||||||||||||||||  ||| || ||||  |||||||||||||| ||||||||||||||  ||||||| |   || ||  ||||| ||||||||    
T  13178155 tcctcagcagttaactgcagctggtttttaaatttctcagcagttaactgccgagggagcaaaaacgtattttact--cgtttcatagcctaatgaaatg 13178252  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  13178253 tgtcaacaacaattt 13178267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 49395714 - 49395664
Alignment:
Q  26 gatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  49395714 gatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 49395664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 18975143 - 18975256
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||| ||||||||| ||||| ||  |||||||| | |||||| |||||||  ||||||| || |||  |||||| ||||  ||||    
T  18975143 tcctctgcagttaactgcaaccagttattaaattcctcgacagttaaccgccgagggggcaaaaacgtattttacttgtgtacctcagctttatacaatg 18975242  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  18975243 tgtcaacaacaatt 18975256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 23276131 - 23276244
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||| |||| | | || ||||| |||||||||||||| |||||| |||||||  ||||||| |  ||| |||||||||||| |||||    
T  23276131 tcctcggcagttaactgtagccggatttttaattcctcagcagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccttatcaaatg 23276230  T
Q  161 tgtcaacaacaatt 174  Q
     || ||||||||||    
T  23276231 cgtgaacaacaatt 23276244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 26633577 - 26633466
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||| || ||| |||||||| || | |||||||   |||||| ||||||   ||||||| || |||| |||| ||||||||||||    
T  26633577 tcctcggcagttaactgcaaccggtttttgaattcttcggtagttaac---cgagggggcaaaagcgtattttacttgtgtgcctcaaccttatgaaatg 26633481  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  26633480 tgtcaacaacaattt 26633466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 29435097 - 29435034
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| || |||||| ||||||||||    
T  29435097 tgagatgaataatggatgagagaacttctgccaaatttgtagca-aaaatcctctgcagttaact 29435034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 35521654 - 35521550
Alignment:
Q  71 ttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaac 170  Q
    |||||||||||| ||| || | ||| || ||||||||||| |||| | ||||||   ||||||| || |||| ||||||||||| |||||||||||||||    
T  35521654 ttaactgcagccggttttttatttcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtgcctcagccttataaaatgtgtcaacaac 35521555  T
Q  171 aattt 175  Q
    |||||    
T  35521554 aattt 35521550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 19499135 - 19499247
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||||||   | || ||||  |||||||||||||||||||||  ||||||  ||||||| || |||||||||| ||||||| |||    
T  19499135 tcctcggcagttaactgcagccgaattttaaatttctcagcagttaactgtcgaggg--caaaaacgtattttacttgtgtgtctcagtcttatgatatg 19499232  T
Q  161 tgtcaacaacaattt 175  Q
    ||  |||||||||||    
T  19499233 tgcgaacaacaattt 19499247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 21944414 - 21944517
Alignment:
Q  72 taactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaaca 171  Q
    ||||||||||| ||| || ||||  ||  |||||| || |||||||   |||||  ||||||||||||||||| ||||||||||| ||||||||||||||    
T  21944414 taactgcagccggtttttaaatttctcgacagttatctatcgaggggataaaaacgtattttatttatgtgtcccagccttatgatatgtgtcaacaaca 21944513  T
Q  172 attt 175  Q
    ||||    
T  21944514 attt 21944517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 6437570 - 6437675
Alignment:
Q  69 agttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaaca 168  Q
    |||||||||||| |  ||||||| ||| || ||||||||||| |||| | ||||||   ||||||| || |||| |||||| ||||| ||||||||||||    
T  6437570 agttaactgcagtcgattattgacttcctcggcagttaactgccgagagggcaaaagcgtattttacttgtgtgcctcagctttatgcaatgtgtcaaca 6437669  T
Q  169 acaatt 174  Q
    ||||||    
T  6437670 acaatt 6437675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 13147621 - 13147556
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactg 77  Q
    |||||||||||||||||||||||  || | ||||||||||||||||||||| ||  ||||||||||    
T  13147621 tgagatgaataatggatgagagagtttttaccagatttgtagcagaagatcatcgacagttaactg 13147556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 51269063 - 51269010
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctc 65  Q
    |||||||||||||| |||||||| ||||||| | ||||||||||||||||||||    
T  51269063 tgagatgaataatgaatgagagagcttctgctaaatttgtagcagaagatcctc 51269010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 4208502 - 4208454
Alignment:
Q  16 atgaataatggatgagagaccttctgccagatttgtagcagaagatcct 64  Q
    ||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  4208502 atgaataatggatgagagagcttctggtagatttgtagcagaagatcct 4208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 1656155 - 1656221
Alignment:
Q  108 ctgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||||| ||||||| |||||||| |  ||| ||||| |||||||||||||||||||||||||||    
T  1656155 ctgtcgaggg-gcaaaaacatattttactcgtgtttctcaaccttatgaaatgtgtcaacaacaattt 1656221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 49927542 - 49927649
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||  |||| ||| || ||||| || ||||||||||| ||||||  ||||||  ||||||| |  ||| |||| ||| |||||||||||||||    
T  49927542 gcagttaactatagccggtttttaaattcttcggcagttaactgccgaggggacaaaaacgtattttactcgtgtttctcggccatatgaaatgtgtcaa 49927641  T
Q  167 caacaatt 174  Q
    ||||||||    
T  49927642 caacaatt 49927649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 36076581 - 36076694
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| |||||||| || |  |||||||  ||| || | ||||   ||||||| || ||| ||||||||||||||||||    
T  36076581 tcctcggcagttaactgcagccggtttttgaattcctcggtggttaactaccgaaggggtaaaacg-tattttacttgtgtttctcagccttatgaaatg 36076679  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||| ||||||    
T  36076680 tgtcaacagcaattt 36076694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 49857873 - 49857984
Alignment:
Q  62 cctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgt 161  Q
    |||| |||||||||||||||   || || |||||||| ||||||||||| |||||| |||   |  ||||||| ||  |||||||| |||||| ||||||    
T  49857873 cctcggcagttaactgcagctgatttttaaattcatcggcagttaactgccgagggggcatttacgtattttactt--gtgtctcaaccttataaaatgt 49857970  T
Q  162 gtcaacaacaattt 175  Q
    ||||||||||||||    
T  49857971 gtcaacaacaattt 49857984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 49924906 - 49924793
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||| |||| ||| |||||||  || |||||||| || ||| || |||||||  ||  ||| |  |||| |||||||||||| ||||    
T  49924906 tcctcggcagttaactgtagccggtttttgaatttttcggcagttaattgccgaaggggcaaaaacgtaaattactcgtgtgcctcagccttatgcaatg 49924807  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  49924806 tgtcaacaacaatt 49924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 7966032 - 7965977
Alignment:
Q  120 caaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    ||||||| ||||||| || |||| |||| ||||||||||| |||||||||||||||    
T  7966032 caaaaatgtattttacttttgtgcctcaaccttatgaaatatgtcaacaacaattt 7965977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 27485103 - 27485008
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtg 162  Q
    |||||||||||||||| | | || ||||| |  ||||||||||| |||||| |||||||  ||||||| |  ||| |||||||||||| |||||||    
T  27485103 gcagttaactgcagccggatttttaattcctaggcagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccttatcaaatgtg 27485008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 36072353 - 36072306
Alignment:
Q  128 tattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||||| |||| || | |||||||||||||||||||||||||||    
T  36072353 tattttatttgtgtgccttaaccttatgaaatgtgtcaacaacaattt 36072306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 29709259 - 29709309
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatc 62  Q
    ||||||||||||||||||| ||| ||||||| |||||| ||||| ||||||    
T  29709259 tgagatgaataatggatgaaagagcttctgctagatttatagcaaaagatc 29709309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 36908699 - 36908648
Alignment:
Q  12 tgagatgaataatggatga----gagaccttctgccagatttgtagcagaag 59  Q
    |||||||||||||||||||    |||| ||||||||||||||||||||||||    
T  36908699 tgagatgaataatggatgaatgagagagcttctgccagatttgtagcagaag 36908648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 36911737 - 36911803
Alignment:
Q  107 actgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaat 173  Q
    |||| ||||| | ||||||  ||||||| ||||  | ||||||||||||||||||||||||||||||    
T  36911737 actgccgaggaaacaaaaacgtattttacttatccgcctcagccttatgaaatgtgtcaacaacaat 36911803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 41779804 - 41779766
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttg 50  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  41779804 tgagatgaataatggatgagagagcttctgctagatttg 41779766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 42570152 - 42570078
Alignment:
Q  101 cagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    ||||||||||||||||  | ||||   | ||||| || |||| ||||||||||||||| ||||||||||||||||    
T  42570152 cagttaactgtcgaggatgtaaaatcgtgttttacttgtgtgcctcagccttatgaaacgtgtcaacaacaattt 42570078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 35181387 - 35181334
Alignment:
Q  121 aaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    ||||||||||||||||  ||||  ||||| ||||| ||||||||||||||||||    
T  35181387 aaaaatatattttattcgtgtgcttcagctttatgcaatgtgtcaacaacaatt 35181334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 35258904 - 35258997
Alignment:
Q  70 gttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgt 163  Q
    ||||||||||||| | | || ||||| || ||||||||||| |||  |||||   |  ||||||| || |||||||||||||||||||||||||    
T  35258904 gttaactgcagccggatttttaattcctcggcagttaactgccgaatgagcatttacgtattttacttgtgtgtctcagccttatgaaatgtgt 35258997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 24364680 - 24364716
Alignment:
Q  19 aataatggatgagagaccttctgccagatttgtagca 55  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  24364680 aataatggatgtgagagcttctgccagatttgtagca 24364716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 44338216 - 44338264
Alignment:
Q  14 agatgaataatggatgagagaccttctgccagatttgtagcagaagatc 62  Q
    ||||||||||| ||||||||| ||| ||  |||||||||||||||||||    
T  44338216 agatgaataatagatgagagaacttatgatagatttgtagcagaagatc 44338264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 29061395 - 29061282
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagccagttattgaattcatcagcagttaactgt 111  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||   | |  ||||| || |||||||||||     
T  29061395 tgagatgaataatggatgagagagcttctaccagatttgtagcagaagatcctcggaagttaactgcagccgaatttctaattcctcggcagttaactgc 29061296  T
Q  112 cgagggagcaaaaa 125  Q
    |||||| |||||||    
T  29061295 cgagggggcaaaaa 29061282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 32034340 - 32034410
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagcc 82  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||||    
T  32034340 tgagacgaataatggataagagatcttctgccagatttgtagcagaagatcatcggcagttaactgcagcc 32034410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 12783905 - 12783969
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||||    
T  12783905 tgagatgaataatggatgagagagctttttccagatttgtagcagaagatcctcggcagttaact 12783969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 13479774 - 13479662
Alignment:
Q  63 ctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtg 162  Q
    |||||||||||||||||||  ||| ||||||||  |  |||||||||  |||||| ||||||   ||||||| || |||| |||||||||||||||||||    
T  13479774 ctcagcagttaactgcagctggtttttgaattccccgacagttaactaccgagggggcaaaagcgtattttacttgtgtgcctcagccttatgaaatgtg 13479675  T
Q  163 tcaacaacaattt 175  Q
    |||||||||||||    
T  13479674 tcaacaacaattt 13479662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 29065853 - 29065791
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaa 74  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||  |||||||    
T  29065853 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29065791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 29074866 - 29074804
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaa 74  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||  |||||||    
T  29074866 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29074804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 29079630 - 29079568
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaa 74  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||  |||||||    
T  29079630 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29079568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 29107439 - 29107377
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaa 74  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||  |||||||    
T  29107439 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29107377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 35021286 - 35021399
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| |||||||||||||||| ||| |||||||| || ||| ||||||| |||||| |||||| | ||||||| |  ||| |||||||| ||| |||||    
T  35021286 tcctcggcagttaactgcagccggtttttgaattcttccgcatttaactgccgagggggcaaaagtgtattttactcgtgtttctcagccatataaaatg 35021385  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||| ||||    
T  35021386 tgtcaacaataatt 35021399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 13401611 - 13401547
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||||||||| | ||||||||    
T  13401611 tgagatgaataatggatgagagagcttctgtcatatttgtagcagaagatcctcggtagttaact 13401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 23958940 - 23958826
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||| |||||||||||| ||| | |||||  || ||||||||||| ||||||  ||||||  ||||||| ||  ||||||||||||||| | |||    
T  23958940 tcctcggcatttaactgcagccggttttggaatttctcggcagttaactgccgaggggacaaaaacgtattttagttgggtgtctcagccttatcatatg 23958841  T
Q  161 tgtcaacaacaattt 175  Q
    |||||||||||||||    
T  23958840 tgtcaacaacaattt 23958826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 12783991 - 12784074
Alignment:
Q  72 taactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatg 155  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||| || ||||||   ||||||| || |||| ||||||||||||    
T  12783991 taactgcagccggttattgaattcatcggcagttaactgccgatggggcaaaagcgtattttacttgtgtgcctcagccttatg 12784074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 26701861 - 26701795
Alignment:
Q  102 agttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaaca 168  Q
    |||||||||||||| | ||||||  ||||||||||| |||| |||||||| ||||||||||||||||    
T  26701861 agttaactgtcgagtgggcaaaatcatattttatttgtgtgcctcagcctaatgaaatgtgtcaaca 26701795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 23986010 - 23986099
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatga 156  Q
    ||||||||||||| || ||| |||||||  || ||||||||||| | |||| |||||||  ||||||| || ||||||||||||||||||    
T  23986010 gcagttaactgcaaccggtttttgaatttctcggcagttaactgccaagggggcaaaaacgtattttacttgtgtgtctcagccttatga 23986099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 13404661 - 13404768
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||||||||  |||||||||||| ||  |||||||||  |||||| |||||    ||||||| || |||| ||| |||||||| ||||||| ||    
T  13404661 gcagttaactgcagcaggttattgaattcctcgacagttaactaccgagggggcaaacgcgtattttacttgtgtgcctcggccttatgcaatgtgttaa 13404760  T
Q  167 caacaatt 174  Q
    ||||||||    
T  13404761 caacaatt 13404768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 32026088 - 32026041
Alignment:
Q  128 tattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    ||||||| || |||| ||||||||||||||||||||||||||||||||    
T  32026088 tattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattt 32026041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 2051078 - 2050974
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||| || ||| |  |||||||| ||||||||||| ||| ||||||||||  ||||||| |  ||||  ||||||||||| ||||    
T  2051078 tcctcggcagttaactgcaaccggtt-tcaaattcatcggcagttaactgccgaaggagcaaaaacgtattttactcgtgtgcatcagccttatgcaatg 2050980  T
Q  161 tgtcaa 166  Q
    ||||||    
T  2050979 tgtcaa 2050974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 13401536 - 13401423
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    |||| |||||||||||||||||  || || ||||| || ||||||||||| |||||| ||||||  |||||| | |  |||  |||| |||||| |||||    
T  13401536 tccttagcagttaactgcagccgattttttaattcctcggcagttaactgccgagggggcaaaagcatatttaactcgtgttactcaaccttataaaatg 13401437  T
Q  161 tgtcaacaacaatt 174  Q
    |||||||| |||||    
T  13401436 tgtcaacatcaatt 13401423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 25141102 - 25141215
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||| |||  ||  |||||||| ||  |||||||||| |||  |  ||||||||||  |||||  |||| |||||||||||| ||||    
T  25141102 tcctcggcagttaactgtagctggtatttgaattcctcgacagttaactgccgaatggacaaaaatataaattattcgtgtgcctcagccttatgcaatg 25141201  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  25141202 tgtcaacaacaatt 25141215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 26856013 - 26855976
Alignment:
Q  19 aataatggatgagagaccttctgccagatttgtagcag 56  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26856013 aataatggatgagagagcttctgccagatttgtagcag 26855976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 17596764 - 17596808
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcag 56  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||    
T  17596764 tgagatgaataatggatgagatagcttctgccagatttatagcag 17596808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 18001257 - 18001150
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||||||||||||| ||| || ||||| ||| |||||||||| |||  | |||   | |||||||| || |||  |||| ||||||||||||||||||    
T  18001257 gcagttaactgcagccggttttt-aattcctcaacagttaactgccgatagggcatttacatattttacttgtgtacctcaaccttatgaaatgtgtcaa 18001159  T
Q  167 caacaattt 175  Q
    |||||||||    
T  18001158 caacaattt 18001150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 6320552 - 6320625
Alignment:
Q  101 cagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaacaacaatt 174  Q
    |||||||||| |||||   |||||| ||||||||||  ||| ||||| |||||| |||| ||||||||||||||    
T  6320552 cagttaactgccgaggagacaaaaacatattttattcgtgtttctcaaccttatcaaatatgtcaacaacaatt 6320625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 29286279 - 29286166
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||| || |||  | | ||| || ||||||||||  |||||| |||||||  ||  ||| || |||| |||| ||||||| ||||    
T  29286279 tcctcggcagttaactgcaaccggtttcttatttcctcggcagttaactaccgagggggcaaaaacgtaaattacttgtgtgcctcaaccttatgcaatg 29286180  T
Q  161 tgtcaacaacaatt 174  Q
    ||||||||||||||    
T  29286179 tgtcaacaacaatt 29286166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 11735 - 11847
Alignment:
Q  63 ctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtg 162  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||| ||| || |||||| | ||||||| || ||| |||||  ||||| |||||||    
T  11735 ctcagcagttaactgcagccggtttttgaattcttcagcagttaactgccgaaggggcaaaagtgtattttacttgtgtatctcaatcttataaaatgtg 11834  T
Q  163 tcaacaacaattt 175  Q
    |||||| ||||||    
T  11835 tcaacagcaattt 11847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 921 - 851
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaactgcagcc 82  Q
    ||||||||||||||||| ||||| ||||||||||||||||||  |||||||||| ||||||||||||||||    
T  921 tgagatgaataatggataagagagcttctgccagatttgtagaggaagatcctcggcagttaactgcagcc 851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 18847 - 18911
Alignment:
Q  12 tgagatgaataatggatgagagaccttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||  |||||||||    
T  18847 tgagatgaataatggatgagaaagcttctgccagatttgtagcagaagatcctcgacagttaact 18911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 12335 - 12400
Alignment:
Q  12 tgagatgaataatggatgagag-accttctgccagatttgtagcagaagatcctcagcagttaact 76  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||||||| ||||||||||    
T  12335 tgagatgaataatggatgagagtagattctgccagatttgtagcagaagatcctcggcagttaact 12400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 7333 - 7433
Alignment:
Q  67 gcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    |||||| | ||||||| ||| |||||||| |||||| ||||||||| |||  ||||||| |||||||| | ||||| |||| ||||||||||| ||||||    
T  7333 gcagttgattgcagccggtttttgaattcctcagcaattaactgtcaaggaggcaaaaacatattttactcatgtgcctcaaccttatgaaatttgtcaa 7432  T
Q  167 c 167  Q
    |    
T  7433 c 7433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 3935 - 3823
Alignment:
Q  61 tcctcagcagttaactgcagccagttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatg 160  Q
    ||||| ||||||||||||||||  || |||||||| ||  |||||||||| ||||||  |||||| |||||||| || |||| |||| ||||||  |||     
T  3935 tcctcggcagttaactgcagccgatttttgaattcctcgacagttaactgccgaggggacaaaaa-atattttacttgtgtgcctcaaccttatccaatt 3837  T
Q  161 tgtcaacaacaatt 174  Q
    |||||||| |||||    
T  3836 tgtcaacatcaatt 3823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 464 - 570
Alignment:
Q  68 cagttaactgcagccag-ttattgaattcatcagcagttaactgtcgagggagcaaaaatatattttatttatgtgtctcagccttatgaaatgtgtcaa 166  Q
    ||||||||||||||| | ||||| ||||| || ||||||||||| |||||||||||||   ||||||| |  ||| |||||| ||||| |||||||| ||    
T  464 cagttaactgcagccggattatt-aattcttcggcagttaactgccgagggagcaaaatcgtattttactcgtgtttctcagtcttatcaaatgtgtaaa 562  T
Q  167 caacaatt 174  Q
    || |||||    
T  563 catcaatt 570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 884 - 932
Alignment:
Q  127 atattttatttatgtgtctcagccttatgaaatgtgtcaacaacaattt 175  Q
    |||||||| || |||| |||||||||||||||| |||||||| ||||||    
T  884 atattttacttgtgtgcctcagccttatgaaatatgtcaacagcaattt 932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University