View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15923_high_11 (Length: 287)

Name: NF15923_high_11
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15923_high_11
NF15923_high_11
[»] chr5 (5 HSPs)
chr5 (1-265)||(30271639-30271903)
chr5 (10-106)||(29360435-29360531)
chr5 (173-265)||(29360315-29360407)
chr5 (41-106)||(29587669-29587734)
chr5 (59-100)||(28735824-28735865)
[»] chr8 (3 HSPs)
chr8 (57-107)||(5071682-5071732)
chr8 (44-94)||(28478065-28478115)
chr8 (53-105)||(18374267-18374319)
[»] chr3 (2 HSPs)
chr3 (209-263)||(25964510-25964564)
chr3 (54-95)||(31652450-31652491)
[»] chr2 (2 HSPs)
chr2 (48-94)||(22556234-22556280)
chr2 (48-97)||(32199512-32199561)
[»] chr6 (1 HSPs)
chr6 (60-97)||(10338617-10338654)
[»] chr4 (1 HSPs)
chr4 (1-94)||(22402332-22402425)
[»] chr1 (1 HSPs)
chr1 (41-94)||(3523380-3523433)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 30271639 - 30271903
Alignment:
Q  1 gaagcactgacacagacacaaacaccaaatacgacctgatactgacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaatcatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30271639 gaagcactgacacagacacaaacaccaaatacgacctgatactgacacgtaaacaccagtaatgatttaagaatatagaagtgattgaatgtaatcatat 30271738  T
Q  101 atgtcagcggccaacaccgtcacgtgtcaaacaccatatacatctttaatctgaagtagcagtgctacaaagcttatatcattacaaccgattaagaaga 200  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  30271739 atgtcagcggccaacaccatcacgtgtcaaacaccatatacacctttaatctgaagtagcagtgctacaaagcttatatcgttacaaccgattaaaaaga 30271838  T
Q  201 gttgattgattaacttgcctgggggaagaacctctcaaagatcattctgtagtagtatgcttcct 265  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30271839 gttgattgaataacttgcctgggggaagaacctctcaaagatcattctgtagtagtatgcttcct 30271903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 29360531 - 29360435
Alignment:
Q  10 acacagacacaaacaccaaatacgacctgatactgacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaatcatatatgtca 106  Q
    ||||| ||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29360531 acacaaacacaaacaccaaatacaaactgataccgacacgtaaacaccagtaatgatttaagaatataaaagtgattgaatgtaatcatatatgtca 29360435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 29360407 - 29360315
Alignment:
Q  173 cttatatcattacaaccgattaagaagagttgattgattaacttgcctgggggaagaacctctcaaagatcattctgtagtagtatgcttcct 265  Q
    |||||||  |||||||  ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  29360407 cttatatggttacaacaaattaagaagtgttgattgattaacttgcctgagggaagaacctctcaaagatcattctatagtagtatgcttcct 29360315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 29587669 - 29587734
Alignment:
Q  41 actgacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaatcatatatgtca 106  Q
    |||| |||||||||||||||||| ||||||||| || ||||||||| ||||||| || ||||||||    
T  29587669 actgtcacgtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaaccacatatgtca 29587734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 28735865 - 28735824
Alignment:
Q  59 gtaatgatttaagaatatagaagtgattgaatgtaatcatat 100  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||    
T  28735865 gtaataatttaagaaaatagaagtgattgaatgtaattatat 28735824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 5071682 - 5071732
Alignment:
Q  57 cggtaatgatttaagaatatagaagtgattgaatgtaatcatatatgtcag 107  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||| ||||||    
T  5071682 cggtaataacttaagaaaatacaagtgattgaatgtaatcatatgtgtcag 5071732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 28478115 - 28478065
Alignment:
Q  44 gacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaa 94  Q
    |||||||| ||||| ||||| |||||| || ||||||||||||||||||||    
T  28478115 gacacgtagacacccgtaataatttaaaaaaatagaagtgattgaatgtaa 28478065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 18374319 - 18374267
Alignment:
Q  53 acaccggtaatgatttaagaatatagaagtgattgaatgtaatcatatatgtc 105  Q
    ||||||||||| ||||||||| ||  | ||||||||||| |||||||||||||    
T  18374319 acaccggtaataatttaagaaaatgaatgtgattgaatgcaatcatatatgtc 18374267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 25964510 - 25964564
Alignment:
Q  209 attaacttgcctgggggaagaacctctcaaagatcattctgtagtagtatgcttc 263  Q
    ||||| || |||| ||||| |||||||||||||||||||| ||||| ||||||||    
T  25964510 attaaattacctgagggaaaaacctctcaaagatcattctatagtaatatgcttc 25964564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 31652450 - 31652491
Alignment:
Q  54 caccggtaatgatttaagaatatagaagtgattgaatgtaat 95  Q
    ||||| |||| ||||||||| |||||||||||||||||||||    
T  31652450 caccgataataatttaagaaaatagaagtgattgaatgtaat 31652491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 22556234 - 22556280
Alignment:
Q  48 cgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaa 94  Q
    |||| |||| |||||| ||||||||| ||||||||||||||||||||    
T  22556234 cgtagacacaggtaataatttaagaaaatagaagtgattgaatgtaa 22556280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 32199512 - 32199561
Alignment:
Q  48 cgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaatca 97  Q
    |||||||||||||||| ||||||||| ||| ||||| | |||||||||||    
T  32199512 cgtaaacaccggtaataatttaagaaaataaaagtggtcgaatgtaatca 32199561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 10338617 - 10338654
Alignment:
Q  60 taatgatttaagaatatagaagtgattgaatgtaatca 97  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  10338617 taataatttaagaaaatagaagtgattgaatgtaatca 10338654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 22402332 - 22402425
Alignment:
Q  1 gaagcactgacacagacacaaacaccaaatacgacctgatactgacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaa 94  Q
    |||||||||| | | ||||  |||||| | |||||  |||||||||| ||| | ||||||||| | || |||| ||||||||||||||||||||    
T  22402332 gaagcactgaaatatacacggacaccagacacgacacgatactgacatgtagagaccggtaataaattgagaaaatagaagtgattgaatgtaa 22402425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 3523380 - 3523433
Alignment:
Q  41 actgacacgtaaacaccggtaatgatttaagaatatagaagtgattgaatgtaa 94  Q
    ||||||||||| |||||| |||| |||| | || ||||||||||||||||||||    
T  3523380 actgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University