View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15923_high_16 (Length: 225)

Name: NF15923_high_16
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15923_high_16
NF15923_high_16
[»] scaffold0134 (1 HSPs)
scaffold0134 (94-205)||(9210-9321)
[»] scaffold0014 (1 HSPs)
scaffold0014 (93-205)||(225965-226076)
[»] chr8 (3 HSPs)
chr8 (93-205)||(31983607-31983718)
chr8 (97-205)||(22223720-22223828)
chr8 (97-205)||(22230062-22230170)
[»] chr5 (7 HSPs)
chr5 (93-205)||(2455488-2455600)
chr5 (93-201)||(30763475-30763584)
chr5 (93-205)||(26550302-26550415)
chr5 (93-205)||(28563715-28563828)
chr5 (97-205)||(19688256-19688364)
chr5 (97-175)||(35382068-35382145)
chr5 (95-176)||(2838114-2838194)
[»] chr4 (2 HSPs)
chr4 (95-205)||(26061201-26061312)
chr4 (97-209)||(53894970-53895081)
[»] chr3 (8 HSPs)
chr3 (93-201)||(30159409-30159518)
chr3 (93-205)||(9157006-9157119)
chr3 (117-205)||(11635637-11635726)
chr3 (95-203)||(22994983-22995091)
chr3 (95-169)||(10961924-10961998)
chr3 (95-169)||(10965433-10965507)
chr3 (128-202)||(18541344-18541418)
chr3 (118-176)||(19302786-19302843)
[»] chr2 (1 HSPs)
chr2 (93-205)||(11058524-11058636)
[»] chr6 (3 HSPs)
chr6 (103-205)||(32111747-32111850)
chr6 (99-209)||(21633056-21633165)
chr6 (97-191)||(7836695-7836787)
[»] chr1 (1 HSPs)
chr1 (110-205)||(49718337-49718433)
[»] chr7 (3 HSPs)
chr7 (106-205)||(13810795-13810894)
chr7 (98-205)||(16222732-16222840)
chr7 (13-73)||(36816592-36816652)
[»] scaffold0002 (1 HSPs)
scaffold0002 (95-205)||(99577-99686)


Alignment Details
Target: scaffold0134 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 94 - 205
Target Start/End: Original strand, 9210 - 9321
Alignment:
Q  94 caagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaattgttgtttcaaggggt 193  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  9210 caagggacaaacaatgaaaatttttagtaattttaaactcgattgtcccaacaagttataaatattctatagtacctttacaattgttgtttcaaggggt 9309  T
Q  194 gaatgagggatt 205  Q
    ||||||||||||    
T  9310 gaatgagggatt 9321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 225965 - 226076
Alignment:
Q  93 gcaagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaattgttgtttcaagggg 192  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  225965 gcaagggacaaacaatgaaaaatat-agtaattttaaactcgattgtcccaacaagttataaatattctctagtacctttacaattgttgtttcaagggg 226063  T
Q  193 tgaatgagggatt 205  Q
     ||||||||||||    
T  226064 cgaatgagggatt 226076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 31983607 - 31983718
Alignment:
Q  93 gcaagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaattgttgtttcaagggg 192  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31983607 gcaagggacaaacaatgaaaaatat-agtaattttaaactcgattgtcccaacaagttataaatattctctagtacctttacaattgttgtttcaagggg 31983705  T
Q  193 tgaatgagggatt 205  Q
     ||||||||||||    
T  31983706 cgaatgagggatt 31983718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 22223828 - 22223720
Alignment:
Q  97 gggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtaccttt-acaattgttgtttcaaggggtga 195  Q
    |||||||||||||| ||||  ||||||||| |||||||||||| |||| | || | ||||||||||||||| |||| || ||||||||||||| ||||||    
T  22223828 gggacaaacaatgataaatccgagtaatttcaaactcgattgtcccaata-gttacaaatattctctagtaacttttaccattgttgtttcaaagggtga 22223730  T
Q  196 atgagggatt 205  Q
    ||||||||||    
T  22223729 atgagggatt 22223720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 22230170 - 22230062
Alignment:
Q  97 gggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtaccttt-acaattgttgtttcaaggggtga 195  Q
    |||||||||||||| ||||  ||||||||| |||||||||||| |||| | || | ||||||||||||||| |||| || ||||||||||||| ||||||    
T  22230170 gggacaaacaatgataaatccgagtaatttcaaactcgattgtcccaata-gttacaaatattctctagtaacttttaccattgttgtttcaaagggtga 22230072  T
Q  196 atgagggatt 205  Q
    ||||||||||    
T  22230071 atgagggatt 22230062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 2455488 - 2455600
Alignment:
Q  93 gcaagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaattgttgtttcaagggg 192  Q
    |||||||||||||||| |||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2455488 gcaagggacaaacaataaaaaatcttggtaattttaaactcgattgtcccaacaagttataaatattctctagtacctttacaattgttgtttcaagggg 2455587  T
Q  193 tgaatgagggatt 205  Q
    |||||||||||||    
T  2455588 tgaatgagggatt 2455600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 30763475 - 30763584
Alignment:
Q  93 gcaagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtaccttta-caattgttgtttcaaggg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||  ||||||| ||||||||     
T  30763475 gcaagggacaaacaatgaaaaatttgagtaattttaaactcgattgtcccaacaagttacaaatattctctagtacctttataaattgttatttcaaggt 30763574  T
Q  192 gtgaatgagg 201  Q
    ||||||||||    
T  30763575 gtgaatgagg 30763584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 26550302 - 26550415
Alignment:
Q  93 gcaagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttac-aattgttgtttcaaggg 191  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||| | ||||| |||||||||||||||| ||||||| |||||||||    
T  26550302 gcaagggacaaacaaagaaaaatttgagtaactttaaactcgattgtcctaacaagttacaaataatctctagtacctttacaaattgttatttcaaggg 26550401  T
Q  192 gtgaatgagggatt 205  Q
    ||||||||||||||    
T  26550402 gtgaatgagggatt 26550415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 28563828 - 28563715
Alignment:
Q  93 gcaagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttac-aattgttgtttcaaggg 191  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||| | ||||| |||||||||||||||| ||||||| |||||||||    
T  28563828 gcaagggacaaacaaagaaaaatttgagtaactttaaactcgattgtcccaacaagttacaaataatctctagtacctttacaaattgttatttcaaggg 28563729  T
Q  192 gtgaatgagggatt 205  Q
    ||||||||| ||||    
T  28563728 gtgaatgagtgatt 28563715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 19688256 - 19688364
Alignment:
Q  97 gggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttac-aattgttgtttcaaggggtga 195  Q
    ||||||||||| ||||||| ||||||| |||||||||||||| ||| | |||| | |||||  ||||||||| ||||| |||||||||||||||| ||||    
T  19688256 gggacaaacaaagaaaaatctgagtaactttaaactcgattg-tcctaaaagttacaaataagctctagtacttttacaaattgttgtttcaaggtgtga 19688354  T
Q  196 atgagggatt 205  Q
    ||| ||||||    
T  19688355 atgtgggatt 19688364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 35382145 - 35382068
Alignment:
Q  97 gggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttaca 175  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||   || | ||||| |||||||||||||||||    
T  35382145 gggacaaacaatgaaaaatttgagtaatttcaaactcgattgtcccaa-ttgttacaaataatctctagtacctttaca 35382068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 2838194 - 2838114
Alignment:
Q  95 aagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaa 176  Q
    ||||||||||  || |||||||||||||| |||||||| |||||| ||||| ||| | || |||||||| | ||||||||||    
T  2838194 aagggacaaaacattaaaaatttgagtaactttaaacttgattgtcccaac-agttacaagtattctctggcacctttacaa 2838114  T

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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 26061312 - 26061201
Alignment:
Q  95 aagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttaca-attgttgtttcaaggggt 193  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||| |    
T  26061312 aagggacgaacaatgaaaaatctgagtaactttaaactcgattgtcccaacaagttacaaatattctctagtacctttacatattgttgtttcaagggat 26061213  T
Q  194 gaatgagggatt 205  Q
    ||||||| ||||    
T  26061212 gaatgagtgatt 26061201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 53894970 - 53895081
Alignment:
Q  97 gggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaattgttgtttcaaggggtgaa 196  Q
    ||||||||||||||||||| |||||||||| |||||||||||| || | | || | ||||| |||||||||||||||||||||||||||||| ||||| |    
T  53894970 gggacaaacaatgaaaaatctgagtaatttcaaactcgattgtcccgata-gttacaaataatctctagtacctttacaattgttgtttcaaagggtgga 53895068  T
Q  197 tgagggatttaat 209  Q
    |||||||||||||    
T  53895069 tgagggatttaat 53895081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 30159518 - 30159409
Alignment:
Q  93 gcaagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttac-aattgttgtttcaaggg 191  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||| | || |||| | |||||||||||||||||||||| ||||||| |||||||||    
T  30159518 gcaagggacaaacaatgaaaaatctgagtaattttaaacccgattgtcctaaaaagttacaaatattctctagtacctttacaaattgttatttcaaggg 30159419  T
Q  192 gtgaatgagg 201  Q
    ||||||||||    
T  30159418 gtgaatgagg 30159409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 9157006 - 9157119
Alignment:
Q  93 gcaagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttac-aattgttgtttcaaggg 191  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||| | ||||| |||||||||||||||| ||| ||||||||||||     
T  9157006 gcaagggacaaacaaagaaaaatctgagtaactttaaactcgattgtcccaacaagttacaaataatctctagtacctttacaaatggttgtttcaaggt 9157105  T
Q  192 gtgaatgagggatt 205  Q
     |||||| ||||||    
T  9157106 ttgaatgtgggatt 9157119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 11635637 - 11635726
Alignment:
Q  117 tgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttac-aattgttgtttcaaggggtgaatgagggatt 205  Q
    ||||||| ||||||||||||||| ||||| ||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11635637 tgagtaactttaaactcgattgtcccaactagttacaaatattctctagtacctttacaaattgttgtttcaaggggtgaatgagggatt 11635726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 22995091 - 22994983
Alignment:
Q  95 aagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaattgttgtttcaaggggtg 194  Q
    ||||||||| ||||||||||| ||||||| || |||||||||||| ||||||||| | || |||||||||||||||| | || ||||||||||| |||||    
T  22995091 aagggacaagcaatgaaaaatctgagtaacttcaaactcgattgtcccaacaagttacaagtattctctagtaccttaaaaaatgttgtttcaaagggtg 22994992  T
Q  195 aatgaggga 203  Q
    |||||||||    
T  22994991 aatgaggga 22994983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 10961924 - 10961998
Alignment:
Q  95 aagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacc 169  Q
    |||||||||||| |||||||| |||||||||  |||||||||||| |||| |||| | ||||| |||||||||||    
T  10961924 aagggacaaacattgaaaaatctgagtaattccaaactcgattgtcccaataagttacaaataatctctagtacc 10961998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 10965433 - 10965507
Alignment:
Q  95 aagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacc 169  Q
    |||||||||||| |||||||| |||||||||  |||||||||||| |||| |||| | ||||| |||||||||||    
T  10965433 aagggacaaacattgaaaaatctgagtaattccaaactcgattgtcccaataagttacaaataatctctagtacc 10965507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 18541344 - 18541418
Alignment:
Q  128 aaactcgattgttccaacaagtaataaatattctctagtaccttta-caattgttgtttcaaggggtgaatgaggg 202  Q
    |||||||||||| |||| || | | |||| ||||||||||||||||  |||||||||||||| |||||||||||||    
T  18541344 aaactcgattgtcccaataaattacaaatgttctctagtacctttataaattgttgtttcaa-gggtgaatgaggg 18541418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 19302843 - 19302786
Alignment:
Q  118 gagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaa 176  Q
    |||||| ||||||||||||||| |||||| || | || |||||||||||||||||||||    
T  19302843 gagtaactttaaactcgattgtcccaaca-gttacaagtattctctagtacctttacaa 19302786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 11058524 - 11058636
Alignment:
Q  93 gcaagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttac-aattgttgtttcaaggg 191  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||| | ||||| |||||||||||||||| ||||||| |||||| ||    
T  11058524 gcaagggacaaacaaagaaaaatttgagtaaatttaaactcgattgtcccaacaagttacaaataatctctagtacctttacaaattgttatttcaa-gg 11058622  T
Q  192 gtgaatgagggatt 205  Q
    ||||||||||||||    
T  11058623 gtgaatgagggatt 11058636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 32111747 - 32111850
Alignment:
Q  103 aacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttac-aattgttgtttcaaggggtgaatgagg 201  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||||| |  |||||||||||||| |||||| |||||||||||||||||||||||||||    
T  32111747 aacaatgaaaaatatgagtaactttaaactcgattgtcccaacaagttaccaatattctctagtatctttacaaattgttgtttcaaggggtgaatgagg 32111846  T
Q  202 gatt 205  Q
    ||||    
T  32111847 gatt 32111850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 21633056 - 21633165
Alignment:
Q  99 gacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaattgttgtttcaaggggtgaatg 198  Q
    ||||||| | ||||||| |||||||||| |||||||||||| || | | || | ||||| |||||||||||||||||||||||||||||| |||||||||    
T  21633056 gacaaacgaagaaaaatctgagtaatttcaaactcgattgtcccgata-gttacaaataatctctagtacctttacaattgttgtttcaaagggtgaatg 21633154  T
Q  199 agggatttaat 209  Q
    |||||||||||    
T  21633155 agggatttaat 21633165  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 7836695 - 7836787
Alignment:
Q  97 gggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaattgttgtttcaaggg 191  Q
    |||||||| |||||||||| ||||| |||| ||||| ||||  |||    ||| |||||| ||||||||||| ||||||||||||||||||||||    
T  7836695 gggacaaaaaatgaaaaatctgagtgatttcaaacttgatt--tcccgatagttataaatgttctctagtacttttacaattgttgtttcaaggg 7836787  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 205
Target Start/End: Original strand, 49718337 - 49718433
Alignment:
Q  110 aaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttac-aattgttgtttcaaggggtgaatgagggatt 205  Q
    |||||| | ||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49718337 aaaaatcttagtaactttaaactcgattgtcccaacaagttacaaatattctctagtacctttacaaattgttgtttcaaggggtgaatgagggatt 49718433  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 13810894 - 13810795
Alignment:
Q  106 aatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaattgttgtttcaaggggtgaatgagggatt 205  Q
    ||||||||||  ||||||||| |||||||||| | | ||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13810894 aatgaaaaatcagagtaatttcaaactcgattatcctaacaagttacaaatattctctagtacctttacaattgttgtttcaaagggtgaatgagggatt 13810795  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 16222732 - 16222840
Alignment:
Q  98 ggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttac-aattgttgtttcaaggggtgaa 196  Q
    |||||||  ||||||||| ||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||| ||||||| |||||||| |||||    
T  16222732 ggacaaagtatgaaaaatctgagtaactttaaactcgattgtcccaacaagttacaaatattctctagtacctttacaaattgttatttcaaggtgtgaa 16222831  T
Q  197 tgagggatt 205  Q
    || ||||||    
T  16222832 tgtgggatt 16222840  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 36816592 - 36816652
Alignment:
Q  13 aaaagaataaactaatagtatgcatgtacttactagttgaagagcaaaactaatgaaagtt 73  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36816592 aaaagaataaactagtagtatgcatgtacttactagttgaagagcaaaactaatgaaagtt 36816652  T

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Target: scaffold0002 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 99686 - 99577
Alignment:
Q  95 aagggacaaacaatgaaaaatttgagtaattttaaactcgattgttccaacaagtaataaatattctctagtacctttacaattgttgtttcaaggggtg 194  Q
    ||||||||||||||||||||| ||||||| || |||||||||||| ||||| ||| | |||| ||||||||||||| ||| |||||||||||||  ||||    
T  99686 aagggacaaacaatgaaaaatctgagtaaattcaaactcgattgtcccaac-agttacaaatgttctctagtacctgtaccattgttgtttcaaaaggtg 99588  T
Q  195 aatgagggatt 205  Q
    |||||||||||    
T  99587 aatgagggatt 99577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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