View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15923_high_4 (Length: 431)
Name: NF15923_high_4
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15923_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 28 - 413
Target Start/End: Complemental strand, 49771292 - 49770907
Alignment:
| Q |
28 |
tattcccacctttgaaaacatggatcaaatccgattacatagtaagtcaacacaacccaaataccaacttctacaaaggttataggaatcttaaggatcc |
127 |
Q |
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| T |
49771292 |
tattcccacctttcaaaacatggatcaaatccgattacatagtaagtcaacacaacccaaataccaacttctacaaaggttataggaatcttaaggatcc |
49771193 |
T |
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| Q |
128 |
aagtaggcaaagaatatgcccaagcagggaaaagaagaaggtccctttgcttatagaaaactgggagtttcattatgaacatcgatagctcggagtatcc |
227 |
Q |
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| T |
49771192 |
aagtaggcaaagaatatgcccaagcagggaaaagcagaaggtccctttgcttatagaaaactgggagtttcattatgaacatcgatagctcggagtatcc |
49771093 |
T |
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| Q |
228 |
attgaacataattacaattagtatgaagaatagagcacccatatagatcccaccatctgtttcagtattccggtgcatctcagttcgtaggaacattgtc |
327 |
Q |
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| T |
49771092 |
attgaacataattacaattagtatgaagaatagagcacccatatagatcccaccatctgtttcagtattccggtgcatctcagttcgtaggaacattgtc |
49770993 |
T |
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| Q |
328 |
attgttacgatgccagtgaagatcaactgaaaacaaatgaaatcaaacatgaatctagtgtaaataacaccgatgaatgatcaagt |
413 |
Q |
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| T |
49770992 |
attgttacgatgccagtgaagatcaactgaaaacaaatgaaatcaaacatgaatctagtgtaaataacaccgatgaatgatcaagt |
49770907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 2885227 - 2885133
Alignment:
| Q |
92 |
caacttctacaaaggttataggaatcttaaggatccaagtaggcaaagaatatgcccaagcagggaaaagaagaaggtccctttgcttatagaaa |
186 |
Q |
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| T |
2885227 |
caacttccagaaaggtaataggaatcttgaggatccatgtaggtatagcatatgcccatgaaggaaaaaacagaaggtctctttgcttgtagaaa |
2885133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 2899293 - 2899398
Alignment:
| Q |
81 |
aacccaaataccaacttctacaaaggttataggaatcttaaggatccaagtaggcaaagaatatgcccaagcagggaaaagaagaaggtccctttgctta |
180 |
Q |
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| T |
2899293 |
aacccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgtaggtatagcatatgcccatgaaggaaaaaacagaaggtctctttgcttg |
2899392 |
T |
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| Q |
181 |
tagaaa |
186 |
Q |
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|||||| |
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| T |
2899393 |
tagaaa |
2899398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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