View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15923_high_9 (Length: 300)

Name: NF15923_high_9
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15923_high_9
NF15923_high_9
[»] chr8 (1 HSPs)
chr8 (15-300)||(37430475-37430760)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 37430475 - 37430760
Alignment:
Q  15 aatgggtaatcccttttgagccgtctttatttatgaatggaatctcatttctttcgaccaaaaagaaatgcannnnnnnaacccaacaaaaacacctttc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  37430475 aatgggtaatcccttttgagccgtctttatttatgaatggaatctcatttctttcgaccaaaaagaaatgcatttttttaacccaacaaaaacacctttc 37430574  T
Q  115 gctagaggggcgcgagtatattatgttgaatacatagagtatattaatctctcttactcaactgatagctagttaaggatgtaagcaactaaagagaagc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  37430575 gctagaggggcgcgagtatattatgttgaatacatagagtatattaatctctcttactcaactgatagctagttaaggatggaagcaactaaagaaaagc 37430674  T
Q  215 tagaacaaatagcctaaaccaatatagttcagacagaaatgacttggttcactggattaaatcaaaacataaaattacatgatggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37430675 tagaacaaatagcctaaaccaatatagttcagacagaaatgacttggttcactggattaaatcaaaacataaaattacatgatggt 37430760  T

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