View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15923_low_17 (Length: 260)
Name: NF15923_low_17
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15923_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 41038710 - 41038947
Alignment:
| Q |
19 |
cattggcattagccataaatgttatctcccttcctaaa-----agttacaccatttgtttataaaagaactaaatataaaattgcaaaaattcaagatac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41038710 |
cattggcattagccataaatgttatctcccttcctaaagagtgagttacaccatttgtttataaaagaactaaatataaaattgcaaaaattcaagatac |
41038809 |
T |
|
| Q |
114 |
catatcaaattcagagccctgatcaagcagctcatgaaggccatttacgatcgtctagtaatcaaactaataaatacattatgtaggcctaattctctca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41038810 |
catatcaaattcagagccctgatcaagcagctcatgaaggccatttacgatcgtctagtaatcaaactaataaatacattatgtaggcctaattctctca |
41038909 |
T |
|
| Q |
214 |
tccattgaagagttctaaaaagacatgtagtttcatct |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41038910 |
tccattgaagagttctaaaaagacatgtagtttcatct |
41038947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University