View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15923_low_18 (Length: 241)

Name: NF15923_low_18
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15923_low_18
NF15923_low_18
[»] chr5 (12 HSPs)
chr5 (1-225)||(10543781-10544006)
chr5 (1-49)||(26718892-26718940)
chr5 (1-49)||(26988636-26988684)
chr5 (1-44)||(2530846-2530889)
chr5 (1-49)||(10407570-10407618)
chr5 (1-49)||(27530603-27530651)
chr5 (1-48)||(1366470-1366517)
chr5 (3-49)||(11242262-11242308)
chr5 (4-49)||(34426015-34426060)
chr5 (12-44)||(2412204-2412236)
chr5 (13-49)||(22875060-22875096)
chr5 (8-44)||(35080720-35080756)
[»] chr7 (7 HSPs)
chr7 (1-48)||(23020430-23020477)
chr7 (1-42)||(38971361-38971402)
chr7 (1-46)||(21763537-21763582)
chr7 (1-44)||(23859182-23859225)
chr7 (10-44)||(26917681-26917715)
chr7 (1-49)||(12981433-12981481)
chr7 (12-40)||(27237378-27237406)
[»] chr4 (8 HSPs)
chr4 (1-49)||(5893126-5893174)
chr4 (1-49)||(27112143-27112191)
chr4 (9-49)||(39329337-39329377)
chr4 (1-42)||(30507071-30507112)
chr4 (1-40)||(11906856-11906895)
chr4 (1-42)||(4167874-4167915)
chr4 (1-46)||(10041947-10041992)
chr4 (1-49)||(52468399-52468447)
[»] chr2 (13 HSPs)
chr2 (1-49)||(21665647-21665695)
chr2 (9-49)||(11952535-11952575)
chr2 (1-49)||(37182752-37182800)
chr2 (2-49)||(12694788-12694835)
chr2 (1-44)||(13800495-13800538)
chr2 (5-44)||(44914855-44914894)
chr2 (12-49)||(12133982-12134019)
chr2 (1-42)||(28425660-28425701)
chr2 (1-49)||(42029257-42029305)
chr2 (9-49)||(7742075-7742115)
chr2 (9-49)||(11912702-11912742)
chr2 (1-49)||(16097116-16097164)
chr2 (9-49)||(38400914-38400954)
[»] chr1 (5 HSPs)
chr1 (1-44)||(5533432-5533475)
chr1 (1-49)||(6221796-6221844)
chr1 (4-49)||(45758619-45758664)
chr1 (1-42)||(43235720-43235761)
chr1 (1-41)||(39134673-39134713)
[»] chr8 (12 HSPs)
chr8 (1-45)||(5942776-5942820)
chr8 (1-45)||(7944472-7944516)
chr8 (1-49)||(14509926-14509974)
chr8 (1-49)||(34048654-34048702)
chr8 (1-49)||(34789808-34789856)
chr8 (1-44)||(15078867-15078910)
chr8 (3-44)||(5973058-5973099)
chr8 (8-44)||(4097821-4097857)
chr8 (1-49)||(30674349-30674397)
chr8 (1-41)||(34868130-34868170)
chr8 (9-49)||(38009097-38009137)
chr8 (9-49)||(39332354-39332394)
[»] chr6 (1 HSPs)
chr6 (1-49)||(2477531-2477579)
[»] scaffold0022 (2 HSPs)
scaffold0022 (1-44)||(40197-40240)
scaffold0022 (1-44)||(138257-138300)
[»] chr3 (5 HSPs)
chr3 (1-42)||(52374769-52374810)
chr3 (1-49)||(23641263-23641311)
chr3 (5-46)||(32319106-32319147)
chr3 (1-42)||(49393201-49393242)
chr3 (1-49)||(54574769-54574817)
[»] scaffold1320 (1 HSPs)
scaffold1320 (1-44)||(1463-1506)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-44)||(206440-206483)
[»] scaffold0902 (1 HSPs)
scaffold0902 (1-49)||(4409-4457)
[»] scaffold0097 (1 HSPs)
scaffold0097 (9-45)||(39045-39081)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 10543781 - 10544006
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccgattcgtaggaacggccctgtatattgccataatagcaaattaagaatttaac 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  10543781 aaaatacatttttattttattacggatctcttttcacttatagaaccgattcgtaggaacgggcatgtatattgccataatagcaaattaagaatttaac 10543880  T
Q  101 ttcggtcnnnnnnnnnnngaa-tttaacctgatatatatacttgtataaagtcagaaagcttattcatgctaattggatagacacaaggagtaaaaagaa 199  Q
    |||||||            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10543881 ttcggtcaaaaaaaaataaaaatttaacctgatatatatacttgtataaagtcagaaagcttattcatgctaattggatagacacaaggagtaaaaagaa 10543980  T
Q  200 gatggccatatttggcgagtgcttat 225  Q
    ||||||||||||||||||||||||||    
T  10543981 gatggccatatttggcgagtgcttat 10544006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26718940 - 26718892
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  26718940 aaaatacgtttttattttattacgggtctcttttcacttacagaaccga 26718892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26988684 - 26988636
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  26988684 aaaatacgtttttattttattacgggtctcttttcacttacagaaccga 26988636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2530889 - 2530846
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacaga 44  Q
    |||||||||||||||||||||||||  |||||||||||||||||    
T  2530889 aaaatacatttttattttattacgggcctcttttcacttacaga 2530846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10407570 - 10407618
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||| |||||||||||||| ||| ||||||||||||| ||||||||    
T  10407570 aaaatacttttttattttattatggacctcttttcacttatagaaccga 10407618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27530603 - 27530651
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||| ||||||||||||||||||||  ||||||||||||| ||||||||    
T  27530603 aaaaaacatttttattttattacgggcctcttttcacttatagaaccga 27530651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1366517 - 1366470
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccg 48  Q
    ||||||| |||||||||| ||||||| ||||||| |||||||||||||    
T  1366517 aaaatacgtttttatttttttacggacctctttttacttacagaaccg 1366470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 11242308 - 11242262
Alignment:
Q  3 aatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||| ||||||||||||||||  |||||||||||||||||| ||||    
T  11242308 aatacgtttttattttattacgagtctcttttcacttacagagccga 11242262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 34426015 - 34426060
Alignment:
Q  4 atacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||||||||||||||   ||| |||||||||||||||||||    
T  34426015 atacatttttattttattacatgtcttttttcacttacagaaccga 34426060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 2412204 - 2412236
Alignment:
Q  12 ttattttattacggatctcttttcacttacaga 44  Q
    ||||||||||||||| |||||||||||||||||    
T  2412204 ttattttattacggacctcttttcacttacaga 2412236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 22875060 - 22875096
Alignment:
Q  13 tattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||||| | |||||||||||||||||||||||    
T  22875060 tattttattactgttctcttttcacttacagaaccga 22875096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 35080756 - 35080720
Alignment:
Q  8 atttttattttattacggatctcttttcacttacaga 44  Q
    ||||||||||||||||||  |||||||||||||||||    
T  35080756 atttttattttattacggccctcttttcacttacaga 35080720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23020477 - 23020430
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccg 48  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  23020477 aaaatacatttttattttattacggacctcttttcacttacagaaccg 23020430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38971361 - 38971402
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttaca 42  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  38971361 aaaatacatttttattttattacgggtctcttttcacttaca 38971402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21763582 - 21763537
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaac 46  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||    
T  21763582 aaaatacgtttttattttattacggatctctttttacttatagaac 21763537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23859182 - 23859225
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacaga 44  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||    
T  23859182 aaaatacgtttttattttattacaggtctcttttcacttacaga 23859225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 26917715 - 26917681
Alignment:
Q  10 ttttattttattacggatctcttttcacttacaga 44  Q
    ||||||||||||||||| |||||||||||||||||    
T  26917715 ttttattttattacggacctcttttcacttacaga 26917681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12981433 - 12981481
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||| |||||||||||||||||||   |||||||||| |||||||||||    
T  12981433 aaaaaacatttttattttattacgagcctcttttcacctacagaaccga 12981481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 27237406 - 27237378
Alignment:
Q  12 ttattttattacggatctcttttcactta 40  Q
    |||||||||||||||||||||||||||||    
T  27237406 ttattttattacggatctcttttcactta 27237378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5893126 - 5893174
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  5893126 aaaatacatttttattttattacggacctcttttcacttacagagccga 5893174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27112143 - 27112191
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||||    
T  27112143 aaaatacaatcttattttattacgggtctcttttcacttacagaaccga 27112191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 39329377 - 39329337
Alignment:
Q  9 tttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  39329377 tttttattttattacggacctcttttcacttacagaaccga 39329337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30507112 - 30507071
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttaca 42  Q
    |||||||||||||||||||||| || ||||||||||||||||    
T  30507112 aaaatacatttttattttattatgggtctcttttcacttaca 30507071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11906895 - 11906856
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcactta 40  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  11906895 aaaatacatttttattttattacgggcctcttttcactta 11906856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4167915 - 4167874
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttaca 42  Q
    ||||||| |||||||||||||||||  |||||||||||||||    
T  4167915 aaaatacgtttttattttattacgggcctcttttcacttaca 4167874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10041992 - 10041947
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaac 46  Q
    |||||||  |||||||||| |||||| |||||||||||||||||||    
T  10041992 aaaatacgcttttattttactacggacctcttttcacttacagaac 10041947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52468399 - 52468447
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||| ||||||||||||||| || |||||||||| |||||| ||||    
T  52468399 aaaatacgtttttattttattacagacctcttttcacctacagagccga 52468447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21665695 - 21665647
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  21665695 aaaatacatttttattttattacgggtctcttttcacttacagagccga 21665647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 11952575 - 11952535
Alignment:
Q  9 tttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  11952575 tttttattttattacgggtctcttttcacttacagaaccga 11952535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37182752 - 37182800
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  37182752 aaaatacgtttttattttattacgggtctcttttcacttacagagccga 37182800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 12694788 - 12694835
Alignment:
Q  2 aaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||| |||||||||||||||||| |||||||||||||||||| ||||    
T  12694788 aaatatatttttattttattacgggtctcttttcacttacagagccga 12694835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13800538 - 13800495
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacaga 44  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  13800538 aaaatacatttttattttattacgaacctcttttcacttacaga 13800495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 44914894 - 44914855
Alignment:
Q  5 tacatttttattttattacggatctcttttcacttacaga 44  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  44914894 tacatttttattttattacggacctcttttcacttacaga 44914855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 12134019 - 12133982
Alignment:
Q  12 ttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  12134019 ttattttattacggacctcttttcacttacagaaccga 12133982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28425701 - 28425660
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttaca 42  Q
    |||||||||||||||||||||||||| ||||||||| |||||    
T  28425701 aaaatacatttttattttattacggacctcttttcatttaca 28425660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42029257 - 42029305
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||||||||| |||||||| | ||||||||||||||| ||||||    
T  42029257 aaaatacatttttatattattacgaacctcttttcacttacaaaaccga 42029305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 7742115 - 7742075
Alignment:
Q  9 tttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||||||||||| ||||  ||||||||||||||||||||||    
T  7742115 tttttattttatcacgggcctcttttcacttacagaaccga 7742075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 11912742 - 11912702
Alignment:
Q  9 tttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||||||||||||| |||||||||||| ||| ||||    
T  11912742 tttttattttattacggatatcttttcacttatagagccga 11912702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16097116 - 16097164
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||| |||||||||||||||  | ||||||||||||||| ||||    
T  16097116 aaaatacatatttattttattacgggccacttttcacttacagagccga 16097164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 38400914 - 38400954
Alignment:
Q  9 tttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||||||| ||| |||||||||||||||||| ||||    
T  38400914 tttttattttattgcgggtctcttttcacttacagagccga 38400954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5533432 - 5533475
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacaga 44  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  5533432 aaaatacatttttattttattacgggtctcttttcacttacaga 5533475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6221796 - 6221844
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  6221796 aaaataaatttttattttattacgggtctcttttcatttacagaaccga 6221844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 45758619 - 45758664
Alignment:
Q  4 atacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||    
T  45758619 atacatttttattttatttcggacctcttttcacttacagagccga 45758664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43235761 - 43235720
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttaca 42  Q
    ||||||||||||||||||||||| |  |||||||||||||||    
T  43235761 aaaatacatttttattttattacaggcctcttttcacttaca 43235720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39134713 - 39134673
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttac 41  Q
    ||||||| ||||||||||||||||  |||||||||||||||    
T  39134713 aaaatacgtttttattttattacgagtctcttttcacttac 39134673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5942776 - 5942820
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaa 45  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  5942776 aaaatacatttttattttattacggtcctcttttcacttacagaa 5942820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7944516 - 7944472
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaa 45  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||    
T  7944516 aaaatacatttttattttattacggacctcttttcaattacagaa 7944472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14509974 - 14509926
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||||||||||||||||||||||||  || ||||||||| |||||||||    
T  14509974 aaaatacatttttattttattacgggcctattttcacttgcagaaccga 14509926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34048702 - 34048654
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  34048702 aaaaaacatttttattttattacgggtctattttcacttacagagccga 34048654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34789856 - 34789808
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||||||||||||||||||||||||| || |||||||||| ||| ||||    
T  34789856 aaaatacatttttattttattacggaccttttttcacttatagagccga 34789808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15078867 - 15078910
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacaga 44  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||    
T  15078867 aaaatacgtttttattttattacggacttcttttcacttacaga 15078910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 5973099 - 5973058
Alignment:
Q  3 aatacatttttattttattacggatctcttttcacttacaga 44  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  5973099 aatacatttttattttattacagacctcttttcatttacaga 5973058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 4097821 - 4097857
Alignment:
Q  8 atttttattttattacggatctcttttcacttacaga 44  Q
    ||||||||||||||||||||||||||| | |||||||    
T  4097821 atttttattttattacggatctctttttatttacaga 4097857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30674397 - 30674349
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||| ||||||||||||||||   ||||||||||||||||| ||||    
T  30674397 aaaatacgtttttattttattacgagcctcttttcacttacagagccga 30674349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34868170 - 34868130
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttac 41  Q
    ||||||| |||||||||||||| || |||||||||||||||    
T  34868170 aaaatacgtttttattttattatgggtctcttttcacttac 34868130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 38009137 - 38009097
Alignment:
Q  9 tttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||||||||||||  |||||||| ||||||||||||    
T  38009137 tttttattttattacggacttcttttcagttacagaaccga 38009097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 39332394 - 39332354
Alignment:
Q  9 tttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||||||||||  ||||||||||| |||||||||||    
T  39332394 tttttattttattacgagtctcttttcacctacagaaccga 39332354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2477579 - 2477531
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||||    
T  2477579 aaaatacaatcttattttattacgggtctcttttcacttacagaaccga 2477531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40197 - 40240
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacaga 44  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  40197 aaaatacatttttattttattacgaacctcttttcacttacaga 40240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 138257 - 138300
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacaga 44  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  138257 aaaatacatttttattttattacgaacctcttttcacttacaga 138300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 52374769 - 52374810
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttaca 42  Q
    ||||||| ||||||||||||||||||| ||||||||||||||    
T  52374769 aaaatacgtttttattttattacggatttcttttcacttaca 52374810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23641311 - 23641263
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||| |||||||||||| |||| ||||||||||| |||||||||||    
T  23641311 aaaatacgtttttattttatcacgggtctcttttcacctacagaaccga 23641263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 32319147 - 32319106
Alignment:
Q  5 tacatttttattttattacggatctcttttcacttacagaac 46  Q
    ||||||||||||||||||| || || ||||||||||||||||    
T  32319147 tacatttttattttattacagacctattttcacttacagaac 32319106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49393201 - 49393242
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttaca 42  Q
    ||||||||||||||||||||||||  ||| ||||||||||||    
T  49393201 aaaatacatttttattttattacgagtcttttttcacttaca 49393242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54574817 - 54574769
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    ||||||||| ||||||||||||||| |||| |||||||| ||| |||||    
T  54574817 aaaatacatctttattttattacgggtctcatttcacttccagcaccga 54574769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1463 - 1506
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacaga 44  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||    
T  1463 aaaatacgtttttattttattacggacttcttttcacttacaga 1506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 206483 - 206440
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacaga 44  Q
    |||||||||||||||||||||||  | |||||||||||||||||    
T  206483 aaaatacatttttattttattacaaacctcttttcacttacaga 206440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4457 - 4409
Alignment:
Q  1 aaaatacatttttattttattacggatctcttttcacttacagaaccga 49  Q
    |||||||||||||||||||||||||  |||| ||||||| |||| ||||    
T  4457 aaaatacatttttattttattacgggcctctattcacttgcagagccga 4409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 39045 - 39081
Alignment:
Q  9 tttttattttattacggatctcttttcacttacagaa 45  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  39045 tttttattttattacggacctctttttacttacagaa 39081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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