View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15923_low_19 (Length: 238)
Name: NF15923_low_19
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15923_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 25795413 - 25795321
Alignment:
| Q |
4 |
atcagcgagtaaccaaatggaagctaaaagcttctaaatttctttgttcctcccccatcatagcattatcaatctctctcacattcttttctt |
96 |
Q |
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| T |
25795413 |
atcagcgagtaaccaaatggaagctaaaagcttctaaatttctttgttcctccctcatcatagcattatcaatctctctcacattcttttctt |
25795321 |
T |
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Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 25795124 - 25795027
Alignment:
| Q |
124 |
caacagtccatgatccaatgggtcttatgcatcgagagtctttaataaattaagatgagaactcataataccctttacctagaaatgtaactagccat |
221 |
Q |
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| T |
25795124 |
caacagtccatgatccaatgggtcttatgcatcgagagtctttaataaatttaaatgagaaatcataataccctttacctagaaatgtaactacccat |
25795027 |
T |
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