View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15923_low_20 (Length: 233)
Name: NF15923_low_20
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15923_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 34908979 - 34908784
Alignment:
| Q |
21 |
atttcccttacacgtacctaacatgcaacacctcaaatcctcaataaataccaccctctatccctctattttactcatcaaatcacaaaaagaacttata |
120 |
Q |
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| T |
34908979 |
atttcccttacacgtacctaacatgcaacacctcaaatcctcaataaataccaccctctatccctctattttactcatcaaatcacaaaaagaacttaga |
34908880 |
T |
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| Q |
121 |
acacaatctcacattccacaaaacaacatggccaggcacaatatcatcctcatagctacccttcttgcatttgttctcttcattgctcaaacaacc |
216 |
Q |
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| T |
34908879 |
acacaatctcacattccacaaaacaacatggccaggcacaatatcatcctcatagctacccttcttgcatttgttctcttcattgctcaaacaacc |
34908784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 34902749 - 34902567
Alignment:
| Q |
32 |
acgtacctaacatgcaacacctcaaatcctcaataaataccaccctctatccctctattttactcatcaaatcacaaaaagaacttataacacaa--tct |
129 |
Q |
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| T |
34902749 |
acgtacctaacaagcatcaccccaaatcctctataaataccaccctctttccctctttattactcataaaat--caaaaagaagcaatagcaaaaactct |
34902652 |
T |
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| Q |
130 |
cacattccacaaaacaacatggccaggcacaatatcatcctcatagctacccttcttgcatttgttctcttcattgctcaaacaacc |
216 |
Q |
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| T |
34902651 |
caaatttcacataaca--atggccaggcacaacattctcctcatggcttcccttcttgcattagttctcttcatttctcaagcaacc |
34902567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 34895233 - 34895051
Alignment:
| Q |
32 |
acgtacctaacatgcaacacctcaaatcctcaataaataccaccctctatccctctattttactcatcaaatcacaaaaagaacttataacacaa--tct |
129 |
Q |
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|||||||||||||| | | || ||||||||| |||||||||||||||| ||||||| | |||||||| |||| ||||||||| ||| || || ||| |
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| T |
34895233 |
acgtacctaacatgaatctccccaaatcctctataaataccaccctctttccctctttattactcataaaat--caaaaagaagcaatagcaaaaactct |
34895136 |
T |
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| Q |
130 |
cacattccacaaaacaacatggccaggcacaatatcatcctcatagctacccttcttgcatttgttctcttcattgctcaaacaacc |
216 |
Q |
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|| ||| |||| |||| |||||||||||||| || ||||||| ||| ||||||||||||| ||| |||||||| ||||| ||||| |
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| T |
34895135 |
caaatttcacagaaca--atggccaggcacaacattctcctcatggcttcccttcttgcattagttatcttcatttctcaagcaacc |
34895051 |
T |
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