View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15923_low_25 (Length: 221)

Name: NF15923_low_25
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15923_low_25
NF15923_low_25
[»] chr2 (20 HSPs)
chr2 (182-221)||(9058476-9058515)
chr2 (184-221)||(30915461-30915498)
chr2 (184-221)||(33436165-33436202)
chr2 (184-220)||(38882879-38882915)
chr2 (182-221)||(10249447-10249486)
chr2 (186-221)||(28381720-28381755)
chr2 (186-221)||(40701478-40701513)
chr2 (185-221)||(5574553-5574589)
chr2 (185-221)||(7465800-7465836)
chr2 (189-221)||(19930885-19930917)
chr2 (189-221)||(28863458-28863490)
chr2 (185-221)||(32505713-32505749)
chr2 (186-221)||(4060685-4060720)
chr2 (186-221)||(13438343-13438378)
chr2 (186-221)||(17473020-17473055)
chr2 (186-221)||(27864704-27864739)
chr2 (183-221)||(17823781-17823819)
chr2 (184-221)||(20700813-20700850)
chr2 (184-221)||(26891569-26891606)
chr2 (185-221)||(33436210-33436246)
[»] chr7 (20 HSPs)
chr7 (183-221)||(7389386-7389424)
chr7 (184-221)||(8080448-8080485)
chr7 (184-221)||(11044186-11044223)
chr7 (184-221)||(38837215-38837252)
chr7 (185-221)||(36361978-36362014)
chr7 (184-221)||(10343628-10343665)
chr7 (180-221)||(36208167-36208208)
chr7 (184-221)||(40957705-40957742)
chr7 (185-221)||(3434561-3434597)
chr7 (189-221)||(3783998-3784030)
chr7 (185-221)||(36362025-36362061)
chr7 (186-221)||(4999579-4999614)
chr7 (186-221)||(19329842-19329877)
chr7 (186-221)||(35137533-35137568)
chr7 (184-221)||(18207178-18207215)
chr7 (184-221)||(19436252-19436289)
chr7 (184-221)||(35468920-35468957)
chr7 (184-221)||(38044195-38044232)
chr7 (185-221)||(22343360-22343396)
chr7 (185-221)||(41915740-41915776)
[»] chr3 (17 HSPs)
chr3 (183-221)||(11095418-11095456)
chr3 (183-221)||(54868960-54868998)
chr3 (184-221)||(49607412-49607449)
chr3 (186-221)||(53982011-53982046)
chr3 (62-104)||(31697746-31697788)
chr3 (185-221)||(17470404-17470440)
chr3 (186-221)||(14623904-14623939)
chr3 (186-221)||(33644200-33644235)
chr3 (183-221)||(11907368-11907406)
chr3 (183-221)||(33118916-33118954)
chr3 (191-221)||(52629305-52629335)
chr3 (184-221)||(27714956-27714993)
chr3 (184-221)||(36707489-36707526)
chr3 (185-221)||(8956761-8956797)
chr3 (185-221)||(21746248-21746284)
chr3 (185-221)||(24700019-24700055)
chr3 (185-221)||(35536625-35536661)
[»] chr6 (9 HSPs)
chr6 (184-221)||(6209530-6209567)
chr6 (186-221)||(17598554-17598589)
chr6 (189-221)||(22880723-22880755)
chr6 (182-221)||(15990107-15990146)
chr6 (185-220)||(22422084-22422119)
chr6 (186-221)||(32869678-32869713)
chr6 (184-221)||(30341425-30341462)
chr6 (184-221)||(31110824-31110861)
chr6 (184-220)||(15832575-15832611)
[»] chr4 (14 HSPs)
chr4 (184-221)||(29239884-29239921)
chr4 (184-221)||(42044432-42044469)
chr4 (186-221)||(6034044-6034079)
chr4 (186-221)||(11511527-11511562)
chr4 (186-221)||(41236347-41236382)
chr4 (182-221)||(48183114-48183153)
chr4 (184-221)||(480512-480549)
chr4 (184-221)||(50052493-50052530)
chr4 (185-221)||(29234310-29234346)
chr4 (186-221)||(3481654-3481689)
chr4 (186-221)||(54473598-54473633)
chr4 (184-221)||(19670781-19670818)
chr4 (185-221)||(47986207-47986243)
chr4 (181-221)||(55475186-55475226)
[»] chr1 (14 HSPs)
chr1 (184-221)||(2581913-2581950)
chr1 (184-221)||(38632386-38632423)
chr1 (186-221)||(9474941-9474976)
chr1 (186-221)||(48716347-48716382)
chr1 (185-221)||(50630457-50630493)
chr1 (186-221)||(3000319-3000354)
chr1 (182-221)||(26274428-26274467)
chr1 (186-221)||(27564800-27564835)
chr1 (186-221)||(47452385-47452420)
chr1 (184-221)||(8346453-8346490)
chr1 (184-221)||(23597156-23597193)
chr1 (184-221)||(32813245-32813282)
chr1 (184-221)||(38595152-38595189)
chr1 (185-221)||(51898748-51898784)
[»] chr8 (18 HSPs)
chr8 (186-221)||(504186-504221)
chr8 (182-221)||(14547918-14547957)
chr8 (183-221)||(4854928-4854966)
chr8 (187-221)||(9122196-9122230)
chr8 (185-221)||(44507152-44507188)
chr8 (186-221)||(1180005-1180040)
chr8 (186-221)||(12831047-12831082)
chr8 (186-221)||(15197333-15197368)
chr8 (186-221)||(20074999-20075034)
chr8 (186-221)||(23122662-23122697)
chr8 (186-221)||(34012361-34012396)
chr8 (186-221)||(40424008-40424043)
chr8 (183-221)||(24307858-24307896)
chr8 (184-221)||(16383375-16383412)
chr8 (184-221)||(24307627-24307664)
chr8 (184-221)||(34307214-34307251)
chr8 (185-221)||(32032724-32032760)
chr8 (185-221)||(37038478-37038514)
[»] chr5 (12 HSPs)
chr5 (186-221)||(35785199-35785234)
chr5 (186-221)||(40145407-40145442)
chr5 (187-221)||(36875668-36875702)
chr5 (184-221)||(13811650-13811687)
chr5 (184-221)||(18520949-18520986)
chr5 (184-221)||(36733007-36733044)
chr5 (185-221)||(2740273-2740309)
chr5 (186-221)||(14831814-14831849)
chr5 (186-221)||(33149703-33149738)
chr5 (186-221)||(35943957-35943992)
chr5 (184-221)||(3921330-3921367)
chr5 (185-221)||(41470481-41470517)
[»] scaffold0321 (1 HSPs)
scaffold0321 (184-221)||(10174-10211)


Alignment Details
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 9058476 - 9058515
Alignment:
Q  182 ataagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9058476 ataagagtaatgatacatagacacccttaggtggcaatac 9058515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 30915461 - 30915498
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30915461 aagagtaatgatacatagacacccttaggtggcaatac 30915498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 33436202 - 33436165
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33436202 aagagtaatgatacatagacacccttaggtggcaatac 33436165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 38882915 - 38882879
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaata 220  Q
    |||||||||||||||||||||||||||||||||||||    
T  38882915 aagagtaatgatacatagacacccttaggtggcaata 38882879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 10249486 - 10249447
Alignment:
Q  182 ataagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  10249486 ataagagtaatgatacatagacacccttaggtgacaatac 10249447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 28381755 - 28381720
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  28381755 gagtaatgatacatagacacccttaggtggcaatac 28381720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 40701478 - 40701513
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  40701478 gagtaatgatacatagacacccttaggtggcaatac 40701513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 5574589 - 5574553
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||| |||||||||||||||    
T  5574589 agagtaatgatacatagacactcttaggtggcaatac 5574553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 7465836 - 7465800
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||| |||||||||    
T  7465836 agagtaatgatacatagacacccttagatggcaatac 7465800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 19930917 - 19930885
Alignment:
Q  189 taatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||||    
T  19930917 taatgatacatagacacccttaggtggcaatac 19930885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 28863458 - 28863490
Alignment:
Q  189 taatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||||    
T  28863458 taatgatacatagacacccttaggtggcaatac 28863490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 32505749 - 32505713
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32505749 agagtaatgatacatagacacccttaggtgacaatac 32505713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 4060685 - 4060720
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||| ||||||    
T  4060685 gagtaatgatacatagacacccttaggtgacaatac 4060720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 13438343 - 13438378
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13438343 gagtaatgatacatagacacccttaggtgacaatac 13438378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 17473020 - 17473055
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||| |||||||||    
T  17473020 gagtaatgatacatagacacccttagatggcaatac 17473055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 27864704 - 27864739
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||| ||||||||||    
T  27864704 gagtaatgatacatagacacccttatgtggcaatac 27864739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 17823781 - 17823819
Alignment:
Q  183 taagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  17823781 taagagtaatgatacatatacatccttaggtggcaatac 17823819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 20700813 - 20700850
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  20700813 aagagtaatgatacatagacatccttatgtggcaatac 20700850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 26891606 - 26891569
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  26891606 aagagttatgatacatagccacccttaggtggcaatac 26891569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 33436210 - 33436246
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||| |||||| |||||||||    
T  33436210 agagtaatgatacatagacatccttagatggcaatac 33436246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 7389386 - 7389424
Alignment:
Q  183 taagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7389386 taagagtaatgatacatagacacccttaggtggcaatac 7389424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 8080485 - 8080448
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8080485 aagagtaatgatacatagacacccttaggtggcaatac 8080448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 11044186 - 11044223
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11044186 aagagtaatgatacatagacacccttaggtggcaatac 11044223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 38837215 - 38837252
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38837215 aagagtaatgatacatagacacccttaggtggcaatac 38837252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 36362014 - 36361978
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||||||||    
T  36362014 agagtaatgatacatagacacccttaggtggcaatac 36361978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 10343665 - 10343628
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||| |||||    
T  10343665 aagagtaatgatacatagacacccttaggtggaaatac 10343628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 36208167 - 36208208
Alignment:
Q  180 gcataagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  36208167 gcataagagttatgatacatagacacccttaggtggtaatac 36208208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 40957705 - 40957742
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||| |||||||||||||||    
T  40957705 aagagtaatgatacatagacactcttaggtggcaatac 40957742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 3434561 - 3434597
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||| ||||||||||||||||    
T  3434561 agagtaatgatacatagacatccttaggtggcaatac 3434597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 3783998 - 3784030
Alignment:
Q  189 taatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||||    
T  3783998 taatgatacatagacacccttaggtggcaatac 3784030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 36362025 - 36362061
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||| |||||    
T  36362025 agagtaatgatacatagacacccttaggtggtaatac 36362061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 4999614 - 4999579
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||| |||||||||    
T  4999614 gagtaatgatacatagacacccttagatggcaatac 4999579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 19329842 - 19329877
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19329842 gagtaatgatacatagacatccttaggtggcaatac 19329877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 35137533 - 35137568
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||| ||||||||||||||||||||||||    
T  35137533 gagtaatgataaatagacacccttaggtggcaatac 35137568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 18207178 - 18207215
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  18207178 aagagttatgatacatagacaaccttaggtggcaatac 18207215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 19436289 - 19436252
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  19436289 aagagtaatgatacatagacatccttaggtgacaatac 19436252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 35468957 - 35468920
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  35468957 aagagtaatgatacatagacatccttagatggcaatac 35468920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 38044195 - 38044232
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  38044195 aagagttatgatacataaacacccttaggtggcaatac 38044232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 22343360 - 22343396
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  22343360 agagttatgatacataaacacccttaggtggcaatac 22343396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 41915740 - 41915776
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  41915740 agagttatgatacataaacacccttaggtggcaatac 41915776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 11095456 - 11095418
Alignment:
Q  183 taagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11095456 taagagtaatgatacatagacacccttaggtggcaatac 11095418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 54868998 - 54868960
Alignment:
Q  183 taagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||||||||||    
T  54868998 taagagtaatgatacatagacacccttaggtggcaatac 54868960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 49607412 - 49607449
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49607412 aagagtaatgatacatagacacccttaggtggcaatac 49607449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 53982011 - 53982046
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  53982011 gagtaatgatacatagacacccttaggtggcaatac 53982046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 31697746 - 31697788
Alignment:
Q  62 aagaaaatcaactctgaaaacaaaacgctatgagcgagggtaa 104  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  31697746 aagaaaatcaactctgagaacaaaacgctatgagcgagtgtaa 31697788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 17470404 - 17470440
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17470404 agagtaatgatacatagacacctttaggtggcaatac 17470440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 14623939 - 14623904
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||| ||||||||||||||||    
T  14623939 gagtaatgatacatagacatccttaggtggcaatac 14623904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 33644200 - 33644235
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||| |||||||||||    
T  33644200 gagtaatgatacatagacacccttgggtggcaatac 33644235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 11907368 - 11907406
Alignment:
Q  183 taagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  11907368 taagagttatgatacatagacacccttaggtgacaatac 11907406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 33118954 - 33118916
Alignment:
Q  183 taagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  33118954 taagagttatgatacatagacacccttaggtgacaatac 33118916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 52629305 - 52629335
Alignment:
Q  191 atgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||    
T  52629305 atgatacatagacacccttaggtggcaatac 52629335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 27714993 - 27714956
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  27714993 aagagtaatgatacatagacacctttaggtggtaatac 27714956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 36707526 - 36707489
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  36707526 aagagtaatgatacatagatacccttaggtgacaatac 36707489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 8956761 - 8956797
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  8956761 agagtaatgatacatagacatccttatgtggcaatac 8956797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 21746284 - 21746248
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  21746284 agagtaatgatacatatacatccttaggtggcaatac 21746248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 24700055 - 24700019
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||| |||||| |||||||||    
T  24700055 agagtaatgatacatagacatccttagttggcaatac 24700019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 35536625 - 35536661
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  35536625 agagtaatgatacatagacatccttatgtggcaatac 35536661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 6209567 - 6209530
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6209567 aagagtaatgatacatagacacccttaggtggcaatac 6209530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 17598554 - 17598589
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  17598554 gagtaatgatacatagacacccttaggtggcaatac 17598589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 22880755 - 22880723
Alignment:
Q  189 taatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||||    
T  22880755 taatgatacatagacacccttaggtggcaatac 22880723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 15990146 - 15990107
Alignment:
Q  182 ataagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  15990146 ataagagttatgatacataaacacccttaggtggcaatac 15990107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 22422119 - 22422084
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaata 220  Q
    |||||||||||||||||||| |||||||||||||||    
T  22422119 agagtaatgatacatagacatccttaggtggcaata 22422084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 32869678 - 32869713
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||||||||||||||||||||||    
T  32869678 gagtaaagatacatagacacccttaggtggcaatac 32869713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 30341462 - 30341425
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  30341462 aagagttatgatacataaacacccttaggtggcaatac 30341425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 31110861 - 31110824
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  31110861 aagagttatgatacatagacatccttaggtggcaatac 31110824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 15832575 - 15832611
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaata 220  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  15832575 aagagtaatgatacatagacacctttaggtgacaata 15832611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 29239884 - 29239921
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29239884 aagagtaatgatacatagacacccttaggtggcaatac 29239921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 42044469 - 42044432
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42044469 aagagtaatgatacatagacacccttaggtggcaatac 42044432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 6034044 - 6034079
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  6034044 gagtaatgatacatagacacccttaggtggcaatac 6034079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 11511562 - 11511527
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  11511562 gagtaatgatacatagacacccttaggtggcaatac 11511527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 41236347 - 41236382
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  41236347 gagtaatgatacatagacacccttaggtggcaatac 41236382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 48183153 - 48183114
Alignment:
Q  182 ataagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  48183153 ataagagtaatgatacatagacacccttacgtggcaatac 48183114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 480549 - 480512
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  480549 aagagtaatgatacatagacacccttaggtgacaatac 480512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 50052530 - 50052493
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  50052530 aagagtaatgatacatagacatccttaggtggcaatac 50052493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 29234346 - 29234310
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||| |||||||||    
T  29234346 agagtaatgatacatagacacccttagatggcaatac 29234310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 3481654 - 3481689
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3481654 gagtaatgatacatagacacctttaggtggcaatac 3481689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 54473633 - 54473598
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||| ||||||    
T  54473633 gagtaatgatacatagacacccttaggtgacaatac 54473598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 19670818 - 19670781
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  19670818 aagagttatgatacataaacacccttaggtggcaatac 19670781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 47986207 - 47986243
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  47986207 agagttatgatacataaacacccttaggtggcaatac 47986243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 55475186 - 55475226
Alignment:
Q  181 cataagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||| |||||||||| ||| ||||||||||||||||    
T  55475186 cataagagttatgatacataaacatccttaggtggcaatac 55475226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 2581913 - 2581950
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2581913 aagagtaatgatacatagacacccttaggtggcaatac 2581950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 38632423 - 38632386
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38632423 aagagtaatgatacatagacacccttaggtggcaatac 38632386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 9474976 - 9474941
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  9474976 gagtaatgatacatagacacccttaggtggcaatac 9474941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 48716382 - 48716347
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  48716382 gagtaatgatacatagacacccttaggtggcaatac 48716347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 50630457 - 50630493
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||| ||||||||||||||||||    
T  50630457 agagtaatgatacatagatacccttaggtggcaatac 50630493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 3000319 - 3000354
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||| ||||||||||||||||||||    
T  3000319 gagtaatgatacataaacacccttaggtggcaatac 3000354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 26274428 - 26274467
Alignment:
Q  182 ataagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  26274428 ataagaataatgatacatagacacccttatgtggcaatac 26274467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 27564835 - 27564800
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||| ||||||||||||||||    
T  27564835 gagtaatgatacatagacatccttaggtggcaatac 27564800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 47452420 - 47452385
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||| |||||    
T  47452420 gagtaatgatacatagacacccttaggtggtaatac 47452385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 8346490 - 8346453
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  8346490 aagagtaatgatacatagtcacctttaggtggcaatac 8346453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 23597193 - 23597156
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  23597193 aagagtaatgatacatagacatcattaggtggcaatac 23597156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 32813245 - 32813282
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  32813245 aagagttatgatacatagacatccttaggtggcaatac 32813282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 38595152 - 38595189
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  38595152 aagagtaatgatacataaacacctttaggtggcaatac 38595189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 51898784 - 51898748
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||| | ||||||||||||||    
T  51898784 agagtaatgatacatagacatctttaggtggcaatac 51898748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 504221 - 504186
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  504221 gagtaatgatacatagacacccttaggtggcaatac 504186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 14547918 - 14547957
Alignment:
Q  182 ataagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  14547918 ataagagtaaagatacatagacacccttaggtggcaatac 14547957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 4854966 - 4854928
Alignment:
Q  183 taagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  4854966 taagagtaatgatacatagacatccttaggtggcaatac 4854928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 9122196 - 9122230
Alignment:
Q  187 agtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||||||    
T  9122196 agtaatgatacatagacacccttaggtggcaatac 9122230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 44507188 - 44507152
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||| |||||    
T  44507188 agagtaatgatacatagacacccttaggtggtaatac 44507152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 1180040 - 1180005
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||| |||||    
T  1180040 gagtaatgatacatagacacccttaggtggtaatac 1180005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 12831047 - 12831082
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||| ||||||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatac 12831082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 15197333 - 15197368
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||| |||||||||||||||    
T  15197333 gagtaatgatacatagacactcttaggtggcaatac 15197368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 20075034 - 20074999
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||| ||||||||||||||||    
T  20075034 gagtaatgatacatagacatccttaggtggcaatac 20074999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 23122697 - 23122662
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||| ||||||||||    
T  23122697 gagtaatgatacatagacacccttaagtggcaatac 23122662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 34012396 - 34012361
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||| |||||    
T  34012396 gagtaatgatacatagacacccttaggtggtaatac 34012361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 40424043 - 40424008
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||| ||||||||||||||||||    
T  40424043 gagtaatgatacatagatacccttaggtggcaatac 40424008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 24307896 - 24307858
Alignment:
Q  183 taagagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  24307896 taagagttatgatacataaacacccttaggtggcaatac 24307858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 16383375 - 16383412
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  16383375 aagagttatgatacataaacacccttaggtggcaatac 16383412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 24307627 - 24307664
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  24307627 aagagttatgatacataaacacccttaggtggcaatac 24307664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 34307214 - 34307251
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  34307214 aagagttatgatacataaacacccttaggtggcaatac 34307251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 32032724 - 32032760
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  32032724 agagttatgatacataaacacccttaggtggcaatac 32032760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 37038478 - 37038514
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||| | ||||||||||||||    
T  37038478 agagtaatgatacatagacatctttaggtggcaatac 37038514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 35785199 - 35785234
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  35785199 gagtaatgatacatagacacccttaggtggcaatac 35785234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 40145407 - 40145442
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  40145407 gagtaatgatacatagacacccttaggtggcaatac 40145442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 36875702 - 36875668
Alignment:
Q  187 agtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||||||||    
T  36875702 agtaatgatacatagacacccttaggtggcaatac 36875668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 13811650 - 13811687
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||| |||||||||||||||||||||||||||||    
T  13811650 aagagtaaagatacatagacacccttaggtggcaatac 13811687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 18520986 - 18520949
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||| |||||||||||||||||||||||||||||||||    
T  18520986 aagaataatgatacatagacacccttaggtggcaatac 18520949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 36733044 - 36733007
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||| |||||||    
T  36733044 aagagtaatgatacatagacacccttaggtagcaatac 36733007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 2740273 - 2740309
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||| ||||||||||||||||    
T  2740273 agagtaatgatacatagacatccttaggtggcaatac 2740309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 14831814 - 14831849
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||| |||||||||||||||    
T  14831814 gagtaatgatacatagacactcttaggtggcaatac 14831849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 33149738 - 33149703
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||||||||||||||||||||||||| |||||    
T  33149738 gagtaatgatacatagacacccttaggtggtaatac 33149703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 35943992 - 35943957
Alignment:
Q  186 gagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||| |||||||||||||||||||||||||||||||    
T  35943992 gagttatgatacatagacacccttaggtggcaatac 35943957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 3921367 - 3921330
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  3921367 aagagttatgatacataaacacccttaggtggcaatac 3921330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 41470517 - 41470481
Alignment:
Q  185 agagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  41470517 agagtaataatacatagacacctttaggtggcaatac 41470481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 10211 - 10174
Alignment:
Q  184 aagagtaatgatacatagacacccttaggtggcaatac 221  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  10211 aagagttatgatacatagacacctttaggtggcaatac 10174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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