View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15923_low_26 (Length: 215)
Name: NF15923_low_26
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15923_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 8775460 - 8775261
Alignment:
| Q |
1 |
tatcttcatctgctgcatcacactctatcacatgatcatttttatcaattaaagcggccatatttccatgatcttcatccattttatcatcatcttcacc |
100 |
Q |
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| T |
8775460 |
tatcttcatctgctgcatcacactctatcacatgatcatttttatcaattaaagcggccatatttccatgatcttcatccattttatcatcatcttcacc |
8775361 |
T |
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| Q |
101 |
ggtatttgcactcaaattgtttacattatcttcatctgcatcaagatctatcgtatggtcatttttagcatttaaagcagccatgttttcaccattcatc |
200 |
Q |
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| T |
8775360 |
ggtatttgcactcaaattgtttacattatcttcatctgcatcaagatctatcgtatggtcatttttagcatttaaagcagccatattttcaccattcatc |
8775261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 8775555 - 8775448
Alignment:
| Q |
32 |
atgatcatttttatcaattaaagcggccatatttccatgatcttcatccattttatcatcatcttcaccggtatttgcactcaaattgtttacattatct |
131 |
Q |
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| T |
8775555 |
atgatcgtttttatcaattaaagcagccgtatttccatgatcttcacccatttcatcatcatcttcaccggtatttgcactcaaattgttcacattatct |
8775456 |
T |
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| Q |
132 |
tcatctgc |
139 |
Q |
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| T |
8775455 |
tcatctgc |
8775448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 8775677 - 8775528
Alignment:
| Q |
33 |
tgatcatttttatcaattaaagcggccatatttccatgatcttcatccattttatcatcatcttcaccggtatttgcactcaaattgtttacattatctt |
132 |
Q |
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| T |
8775677 |
tgattatttttatcaattaaagcatccgtatttccataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatctt |
8775578 |
T |
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| Q |
133 |
catctgcatcaagatctatcgtatggtcatttttagcatttaaagcagcc |
182 |
Q |
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| T |
8775577 |
catcagcctcatcatctatagtatgatcgtttttatcaattaaagcagcc |
8775528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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