View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15923_low_27 (Length: 209)
Name: NF15923_low_27
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15923_low_27 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 16077330 - 16077122
Alignment:
| Q |
1 |
ccatctccctcacaccccttctttcctctctacttctaaccgcattgaaatcccccaccaaacaccacactccatcccctaagccttcctttacctccgc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16077330 |
ccatctccctcacaacccttctttcctctctacttctaaccgcattgaaatcccccaccaaacaccacactccatcccctaagccttcctttacctccgc |
16077231 |
T |
|
| Q |
101 |
caaaataccccacaacctccttttagcctccaactcacacttcgaataaacattaacaacaaaacacctaatcgacaacggacctcattggagttatacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16077230 |
caaaataccccacaacctccttttagcctccaactcacacttcgaataaacattaacaacaaaacacctaatcgacaacggacctcattggagttatacc |
16077131 |
T |
|
| Q |
201 |
aagtaaact |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
16077130 |
aagtaaact |
16077122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 6229025 - 6228856
Alignment:
| Q |
20 |
tctttcctctctacttctaaccgcattgaaatcccccaccaaacaccacactccatcccctaagccttcctttacctccgccaaaataccccacaacctc |
119 |
Q |
| |
|
||||||||| | | |||| |||||||| ||||||||||||||||||||||| ||||| ||||| || ||||| | |||| ||||| || |||| || | |
|
|
| T |
6229025 |
tctttcctcccgagttctcaccgcattaaaatcccccaccaaacaccacacaccatcacctaaaccatccttcaactccaccaaattatcccataatgtt |
6228926 |
T |
|
| Q |
120 |
cttttagcctccaactcacacttcgaataaacattaacaacaaaacacctaatcgacaacggacctcatt |
189 |
Q |
| |
|
||||| ||| | | |||||||||||||||| ||| || |||||||| ||| ||| ||||||||| |||| |
|
|
| T |
6228925 |
cttttggccactagatcacacttcgaataaatattcacgacaaaacatctagtcgccaacggaccccatt |
6228856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 3681509 - 3681671
Alignment:
| Q |
15 |
ccccttctttcctctctacttctaaccgcattgaaatcccccaccaaacaccacactccatcccctaagccttcctttacctccgccaaaataccccaca |
114 |
Q |
| |
|
|||||||||||||| | || | | |||||||| |||||||||||||||||||| || ||||| || ||||| || ||| ||||| | |||| | |
|
|
| T |
3681509 |
ccccttctttcctcgcgacatatcaccgcattaaaatcccccaccaaacacca-------tcacctaacccctccttcacttccaccaaattgtcccata |
3681601 |
T |
|
| Q |
115 |
acctccttttagcctccaactcacacttcgaataaacattaacaacaaaacacctaatcgacaacggacc |
184 |
Q |
| |
|
| |||||||||||| | | |||||| |||||||||| ||| ||||||||| | ||| ||| ||||||||| |
|
|
| T |
3681602 |
atctccttttagccgcaagctcacatttcgaataaatattcacaacaaaatatctagtcgccaacggacc |
3681671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 8507641 - 8507686
Alignment:
| Q |
109 |
cccacaacctccttttagcctccaactcacacttcgaataaacatt |
154 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| ||||| ||||| |
|
|
| T |
8507641 |
cccacaacctccttttagccaccaaatcacacttagaatacacatt |
8507686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University