View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15923_low_3 (Length: 552)
Name: NF15923_low_3
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15923_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 17 - 544
Target Start/End: Complemental strand, 36809527 - 36809016
Alignment:
| Q |
17 |
atatgttctaatctattgctggtcttgacatacttgtttcattagtgtcatgttattttgttaggatatttgacatccaaatgtcacaatcaatcaacag |
116 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36809527 |
atatgttctaatctcttgttggtcttgacatacttgtttcattagtgtcatattattttgttaggatatttgatatccaaatgtcacaatcaatcaacag |
36809428 |
T |
|
| Q |
117 |
agattgagatcaaatggttgagatttctcaggcatttcatcttagtttaaattagccaaatcaaaatatgctgcatttacttcatcattaatttaagatc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36809427 |
agattgagatcaaatggttgagatttctcag--------------tttaaattagcaaaatcaaaatatgctgcatttacttcatcattaatttaagatc |
36809342 |
T |
|
| Q |
217 |
aaacggttgagattacatagtgaattttacacaattaaataatttgtacgttgatccatatcggacggccaagaaccatgtatgtcattgtcaacgaaca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36809341 |
aaacggttgagattacatagtgaattttacacaattaaataatttatacattgatccatatcggacggccaagaaccatgtatgtcattgtcaaccaac- |
36809243 |
T |
|
| Q |
317 |
aacaagtagaatccaaattcaaaaaagtatatggaattaaataatgaatgtgtagaagcaaacacctttcttgatttcttcttactctagctaacggtca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36809242 |
aacaagtagaatccaaattcaaaaaagtatatgggattaaataatgaatgtgtaaaagcaaacacctttcttgatttcttcttgctctagctaacggtca |
36809143 |
T |
|
| Q |
417 |
caacagcacaacacaagcaaacaatggcgaaactgaaaccctacatttccacaacccaatcccttcattcaattccaaatcacactcttccaattccaat |
516 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36809142 |
caa-agcacaacacaagcaaacaatggcgaaactgaaaccctgcatttccacaacccaatcccttcattcaattccaaatcacactcttccaattccaat |
36809044 |
T |
|
| Q |
517 |
ctccaaattcaacatcaattttcatctc |
544 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
36809043 |
ctccaaattcaacatcaattttcatctc |
36809016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 544
Target Start/End: Original strand, 7110507 - 7110564
Alignment:
| Q |
487 |
aattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
544 |
Q |
| |
|
||||||||||||||||||| |||||| | |||| | ||||| |||||||| ||||||| |
|
|
| T |
7110507 |
aattccaaatcacactctttcaattctattctctagattcatcatcaattctcatctc |
7110564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 483 - 544
Target Start/End: Original strand, 38031445 - 38031506
Alignment:
| Q |
483 |
attcaattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| | ||||| |||||||| ||||||| |
|
|
| T |
38031445 |
attcaattccaaatcacactcttccaattccattctctagattcatcatcaattctcatctc |
38031506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 13277085 - 13277138
Alignment:
| Q |
483 |
attcaattccaaatcacactcttccaattccaatctccaaattcaacatcaatt |
536 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
13277085 |
attcaattccaaatcagactcttccaattccaatctacagattcatcatcaatt |
13277138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 544
Target Start/End: Original strand, 19229115 - 19229176
Alignment:
| Q |
483 |
attcaattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || | ||||| |||||||| ||||||| |
|
|
| T |
19229115 |
attcaattccaaatcacactcttccaattccattatctagattcatcatcaattctcatctc |
19229176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 544
Target Start/End: Complemental strand, 28777528 - 28777467
Alignment:
| Q |
483 |
attcaattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
544 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| | ||||| |||||||| ||||||| |
|
|
| T |
28777528 |
attcaatttcaaatcacactcttccaattccattctctagattcatcatcaattctcatctc |
28777467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 519
Target Start/End: Original strand, 47429953 - 47429989
Alignment:
| Q |
483 |
attcaattccaaatcacactcttccaattccaatctc |
519 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47429953 |
attcaatttcaaatcacactcttccaattccaatctc |
47429989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 487 - 544
Target Start/End: Complemental strand, 32348880 - 32348823
Alignment:
| Q |
487 |
aattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
544 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| | ||||| |||||||| ||||||| |
|
|
| T |
32348880 |
aatttcaaatcacactcttccaattccattctctagattcatcatcaattctcatctc |
32348823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University