View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15923_low_4 (Length: 464)
Name: NF15923_low_4
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15923_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 26495176 - 26495610
Alignment:
| Q |
19 |
cctagaagtgtctgtgcctcgtaattcataaatcataatttttcaaacacaaggtcaatagaatcaaacacgattatttgattattataataatgaaaac |
118 |
Q |
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| T |
26495176 |
cctagaagtgtccgtgcctcgtagctcataaatcataatttttcaaacacaaggtcaatagactcaaacaaaattatttgattattataataataaaaac |
26495275 |
T |
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| Q |
119 |
tatgattattgaagaatccaaacctataaacatacctaatcttaacagaaagaggagtccaacattgtgtgaaaattatatcaccccttttggttccaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26495276 |
tatgattattgaagaatccaaacctataaacatacctaatcttaacagaaagaggagtccaacattgtgtgaaaattatatcaccccttttggttccaaa |
26495375 |
T |
|
| Q |
219 |
aagccaatactccctcaaacatttctcatcaccatcctccaaaactctccttatagccaattccctcctcatcataggatccaacaccttcatggaaacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26495376 |
aagccaatactccctcaaacatttctcatcaccatcctccaaaactctccttatagccaattccctcctcatcataggatccaacaccttcatggaaacc |
26495475 |
T |
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| Q |
319 |
acaccaacagcaccaccactcttccatggcacaatctttgccggaacgcgcaccaccgtgcctttccgatgatgatgacaacactcatgattttgtatct |
418 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26495476 |
acaccaacaccaccaccactcttccatggcacaatctttgccggaacgcgcaccaccgtgcctttccgatgatgatgacaacactcatgattttgtatct |
26495575 |
T |
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| Q |
419 |
tctcttctttttcaacaggagatacccttcatctc |
453 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
26495576 |
tctcttctttttcaacaggagatacccttcttctc |
26495610 |
T |
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