View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15923_low_5 (Length: 444)
Name: NF15923_low_5
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15923_low_5 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 42239265 - 42239699
Alignment:
| Q |
18 |
caattttgatgatgatcaatttcatcaaattccattatcaaaaggtccaatttcttaatatttgtgttattaacatttcttttgttaggtgtaaatattt |
117 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42239265 |
caattttgatcacgatcaatttcatcaaattccattatcaaaaggtccaatttcttaatatttgtgttattaacatttcttttgttaggtgtaaatattt |
42239364 |
T |
|
| Q |
118 |
gcacacatgatggcagtgcacagtggcggagccattcattggcttggatgggccgtggcccacccaaaccctnnnnnnntcatttctaatttgtaggaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
42239365 |
gcacacatgatggcagtgcacagtggcggagccattcattggcttggatgggccgtggcccacccaaaccct-aaaaaatcatttctaatttgttggaac |
42239463 |
T |
|
| Q |
218 |
aatcagagtttggaatgaaggaa--------gtttacaccaccttcttcatcctaccaaaactactttgttcgcactaaaacatatatgtaccaaacata |
309 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42239464 |
aatcagagtttggattgaaggaatctaaattgtttacaccaccttcttcatcctaccaaaactactttgttcgcactaaaacatatatgtaccaaacat- |
42239562 |
T |
|
| Q |
310 |
gacagttagcatgcagtatctcattgatcatttacaacaatagttgagaaggaaaacaatttatttcacttact------taatgctctattgcgtgcca |
403 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
42239563 |
----gttagcatgcaatatctcattgatcatttacaacaaaagttgagaaggaaaacaatttatttcacttacttgaatataatgctctattgcgcgcca |
42239658 |
T |
|
| Q |
404 |
attgcaccaattacttgaaaactctcttgtattgtagatgc |
444 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42239659 |
attgcaccaattacttgaacactctcttgtattgtagatgc |
42239699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 17649869 - 17649959
Alignment:
| Q |
29 |
atgatcaatttcatcaaattccattatcaaaa-ggtccaatttctt---aatatttgtgttattaacatttcttttgttaggtgtaaatat |
115 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17649869 |
atgatcaatttcgtcaagttccattatcaaaaaggtccaatttttttttaatatttgtgttattaacatttattttgttaggtgtaaatat |
17649959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University