View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15923_low_6 (Length: 442)
Name: NF15923_low_6
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15923_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 6 - 413
Target Start/End: Complemental strand, 6224415 - 6224013
Alignment:
| Q |
6 |
agaagcaaaggagaaagtgcacgaaagacacttttaacaaacattcaatataacaaatctacacgaatttgacacataagtttccaaagatgaattcaaa |
105 |
Q |
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||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6224415 |
agaagcataagagaaagtgcacgacagacacttttaacaaacattcaatataacaaatctacacgaatttgacacataagtttccaaagatgaattcaaa |
6224316 |
T |
|
| Q |
106 |
gttttcataagtagcatggattttacaaaatttgttcaaataaaatcatatgagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcac |
205 |
Q |
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| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6224315 |
gatttcataagtagcacggattttacaaaatttgttcaaataaaatgatatgagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcac |
6224216 |
T |
|
| Q |
206 |
ttcccctccgcaaaggaatgacaaaatattggctgtcaaggagaaatagaagtaagaacatgaaatctaaaagagcacaaattcatagtataagtattga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6224215 |
ttcccctccgcaaaggaatgacaaaatattggctgtcaaggagaaatagaagtaagaacatgaaatctaaaagagcacaaattcatagtataagtattga |
6224116 |
T |
|
| Q |
306 |
tcaaatcaattaccattccttagctctatgctctagcaagtgataaaattttgctttaatttcatagtcactccaatatgaccgctacctatgtgttact |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
6224115 |
tcaaatcaattaccattccttagctctatgctctagcaagtgataaaattttgc-----ttacatagtcactccaatatgaccgctacctatgtgttact |
6224021 |
T |
|
| Q |
406 |
gagataaa |
413 |
Q |
| |
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|| ||||| |
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| T |
6224020 |
gaaataaa |
6224013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 134 - 413
Target Start/End: Complemental strand, 1693296 - 1693033
Alignment:
| Q |
134 |
aatttgttcaaataaaatcatatgagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccgcaaaggaatgacaaaata |
233 |
Q |
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|||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1693296 |
aatttggtcaaataaaatgatatgagaagataatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccacaaaggaatgacaaaata |
1693197 |
T |
|
| Q |
234 |
ttggctgtcaaggagaaatagaagtaagaacatgaaatctaaaagagcacaaattcatagtataagtattgatcaaatcaattaccattccttagctcta |
333 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1693196 |
ttggctgtcaaggagaaatag----aagaacatgaaatctaaaagagcacaaattcatagtataagtattgatcaaatcaattaccattcctta------ |
1693107 |
T |
|
| Q |
334 |
tgctctagcaagtgataaaattttgctttaatttcatagtcactccaatatgaccgctacctatgtgttactgagataaa |
413 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||| || |||||| ||||| |
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| T |
1693106 |
-gctctagcaagtgataaagttttgc-----tttcatagtcactccaatatgaccgttgcctatttgatactgaaataaa |
1693033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 157 - 413
Target Start/End: Original strand, 34620833 - 34621085
Alignment:
| Q |
157 |
gagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccgcaaaggaatgacaaaatattggctg-tcaaggagaaataga |
255 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||||| ||||| ||| | | || | |
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| T |
34620833 |
gagagggtaacttttatcaaaccttgaacaaacattgttatataaccacttcccctccacaaaggaatgacaaaatatcggctgcaaaagaacgagtaaa |
34620932 |
T |
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| Q |
256 |
agtaagaacatgaaatctaaaagagcacaaattcatagtataagtattgatca-aatcaattaccattccttagctctatgctctagcaagtgataaaat |
354 |
Q |
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|||||||| ||||||||| ||| | |||| ||| || | |||||||||| | ||| || |||||||| |||||||||||||||||||||||||||| |
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| T |
34620933 |
ggtaagaacgtgaaatctagaagttcgcaaactcacagaacaagtattgattacaatgaa-taccattctttagctctatgctctagcaagtgataaaga |
34621031 |
T |
|
| Q |
355 |
tttgctttaatttcatagtcactccaatatgaccgctacctatgtgttactgagataaa |
413 |
Q |
| |
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|||| |||||||| ||||||||||||| ||||||||||| |||||| ||||| |
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|
| T |
34621032 |
cttgc-----tttcatagatgctccaatatgacctctacctatgtgatactgaaataaa |
34621085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 134 - 413
Target Start/End: Original strand, 8774076 - 8774339
Alignment:
| Q |
134 |
aatttgttcaaataaaatcatatgagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccgcaaaggaatgacaaaata |
233 |
Q |
| |
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|||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8774076 |
aatttggtcaaataaaatgatatgagaagataatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccacaaaggaatgacaaaata |
8774175 |
T |
|
| Q |
234 |
ttggctgtcaaggagaaatagaagtaagaacatgaaatctaaaagagcacaaattcatagtataagtattgatcaaatcaattaccattccttagctcta |
333 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8774176 |
ttggctgtcaaggagaaatag----aagaacatgaaatctaaaagagcacaaattcatagtataagtattgatcaaatcaattaccattcctta------ |
8774265 |
T |
|
| Q |
334 |
tgctctagcaagtgataaaattttgctttaatttcatagtcactccaatatgaccgctacctatgtgttactgagataaa |
413 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||| || |||||| ||||| |
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| T |
8774266 |
-gctctagcaagtgataaagttttgc-----tttcatagtcactccaatatgaccgttgcctatttgatactgaaataaa |
8774339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 222 - 360
Target Start/End: Original strand, 44117445 - 44117587
Alignment:
| Q |
222 |
aatgacaaaatattggctgtcaaggagaaatagaagtaagaacatgaaatctaaa----agagcacaaattcatagtataagtattgatcaaatcaatta |
317 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
44117445 |
aatgacaaaatattggctgccaaggagaaatagaagtaagaacatgaaatctaaataaaagagcacaaattcatagtataagtattgatcaaatcgatta |
44117544 |
T |
|
| Q |
318 |
ccattccttagctctatgctctagcaagtgataaaattttgct |
360 |
Q |
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|||||||||||| | |||||||||||||||||||| ||||||| |
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| T |
44117545 |
ccattccttagcccaatgctctagcaagtgataaagttttgct |
44117587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 40909660 - 40909576
Alignment:
| Q |
6 |
agaagcaaaggagaaagtgcacgaaagacacttttaacaaacattcaatataacaaatctacacgaatttgacacataagtttcc |
90 |
Q |
| |
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||||||| | ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40909660 |
agaagcataagaggaagtgcacgactgacacttttaacaaacattcaatataacaaatctacacgaatttaacacataagtttcc |
40909576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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