View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15923_low_8 (Length: 384)

Name: NF15923_low_8
Description: NF15923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15923_low_8
NF15923_low_8
[»] chr5 (7 HSPs)
chr5 (1-384)||(41547326-41547709)
chr5 (56-290)||(41519131-41519365)
chr5 (50-290)||(41508905-41509145)
chr5 (206-279)||(41503562-41503635)
chr5 (315-343)||(33080012-33080040)
chr5 (206-290)||(41499369-41499453)
chr5 (198-290)||(41503905-41503997)


Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 41547326 - 41547709
Alignment:
Q  1 tctctttgtctttctcttcagaatcagcagccataaaatcaactggaggatccccctcattgtttccaccaccagagacatttaagctcgtcaatagctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||    
T  41547326 tctctttgtctttctcttcagaatcagcagccataaaatcaactggaggatccctctcattgtttccaccaccagagacatttaagctcatcaatagttt 41547425  T
Q  101 ggaatcatcctccagccttgaaactttttcatgcaagactctaaacttcgtgatccaagacgctagtaatatgtcaacattgtgcttatcatttgctaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547426 ggaatcatcctccagccttgaaactttttcatgcaagactctaaacttcgtgatccaagacgctagtaatatgtcaacattgtgcttatcatttgctaat 41547525  T
Q  201 ttgctattttcgttcctcaattctcttatagttgccaaatccttgtttactgtttcattcaattcaccatttttaatctcaattccagcccacacaatac 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547526 ttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcccacacaatac 41547625  T
Q  301 aatcttcctcccatttttccttcaactttgtcaactccaaaaccttattctccatctcaccagtcactcttctctgcacaccaa 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41547626 aatcttcctcccatttttccttcaactttgtcaactccaaaaccttattctccatctcaccagtcacttttctctgcacaccaa 41547709  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 290
Target Start/End: Original strand, 41519131 - 41519365
Alignment:
Q  56 ctcattgtttccaccaccagagacatttaagctcgtcaatagcttggaatcatcctccagccttgaaactttttcatgcaagactctaaacttcgtgatc 155  Q
    |||||||||||||||||||||| ||| ||  ||| |  | || |||||||||||||||| ||||| |||| ||||||| ||  || |||||||  || ||    
T  41519131 ctcattgtttccaccaccagaggcatctacactcattgaaaggttggaatcatcctccaaccttgcaactctttcatgaaatgctttaaactttttgttc 41519230  T
Q  156 caagacgctagtaatatgtcaacattgtgcttatcatttgctaatttgctattttcgttcctcaattctcttatagttgccaaatccttgtttactgttt 255  Q
     ||||| | ||||| || ||| | |||   || ||||   ||||||  || |||||||||||||  || |||||| ||||||||| | |||| |||||||    
T  41519231 aaagactcgagtaagatctcacccttgcatttctcatccactaattctctgttttcgttcctcagctcgcttataattgccaaattcgtgttaactgttt 41519330  T
Q  256 cattcaattcaccatttttaatctcaattccagcc 290  Q
    | |||||||| ||||||||||||||||||||||||    
T  41519331 ccttcaattcgccatttttaatctcaattccagcc 41519365  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 290
Target Start/End: Original strand, 41508905 - 41509145
Alignment:
Q  50 atccccctcattgtttccaccaccagagacatttaagctcgtcaatagcttggaatcatcctccagccttgaaactttttcatgcaagactctaaacttc 149  Q
    ||||||||||| |||||||||||||||| ||| ||  ||| |  | || |||||| ||||||||| ||||| |||| ||||||||||   ||| |||||     
T  41508905 atccccctcatcgtttccaccaccagaggcatctacactcattgaaaggttggaaccatcctccaaccttgcaactctttcatgcaatgttctgaacttt 41509004  T
Q  150 gtgatccaagacgctagtaatatgtcaacattgtgcttatcatttgctaatttgctattttcgttcctcaattctcttatagttgccaaatccttgttta 249  Q
    ||| || ||||| | ||||| || ||| | ||    || ||||  |||||||| || |||||||||||||  || |||||| ||||||||| | | || |    
T  41509005 gtgttcaaagactcgagtaagatctcacccttacatttctcatccgctaattttctgttttcgttcctcagctcgcttataattgccaaattcgtattca 41509104  T
Q  250 ctgtttcattcaattcaccatttttaatctcaattccagcc 290  Q
    ||||||| |||||||||| |||||| || ||||||||||||    
T  41509105 ctgtttccttcaattcactattttttatttcaattccagcc 41509145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 41503562 - 41503635
Alignment:
Q  206 attttcgttcctcaattctcttatagttgccaaatccttgtttactgtttcattcaattcaccatttttaatct 279  Q
    |||||| |||||||  || ||||||||| |||||| ||| || | |||||| |||||||||||| |||||||||    
T  41503562 attttctttcctcagctcacttatagtttccaaattcttcttcattgtttccttcaattcaccagttttaatct 41503635  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 343
Target Start/End: Original strand, 33080012 - 33080040
Alignment:
Q  315 ttttccttcaactttgtcaactccaaaac 343  Q
    |||||||||||||||||||||||||||||    
T  33080012 ttttccttcaactttgtcaactccaaaac 33080040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 41499369 - 41499453
Alignment:
Q  206 attttcgttcctcaattctcttatagttgccaaatccttgtttactgtttcattcaattcaccatttttaatctcaattccagcc 290  Q
    |||||| |||||||  || ||||||||| |||||| ||| || | |||||| |||||||||||| ||| ||||| || |||||||    
T  41499369 attttctttcctcagctcacttatagtttccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagcc 41499453  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 290
Target Start/End: Original strand, 41503905 - 41503997
Alignment:
Q  198 aatttgctattttcgttcctcaattctcttatagttgccaaatccttgtttactgtttcattcaattcaccatttttaatctcaattccagcc 290  Q
    |||||||| ||||| |||||||| || |||||||||||||||| |||  | || ||| | |||||||| | ||||||| ||| |||| |||||    
T  41503905 aatttgctgttttctttcctcaactcgcttatagttgccaaatacttcgtcacagttgccttcaattcgctatttttactcttaatttcagcc 41503997  T

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