View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15924_low_4 (Length: 269)
Name: NF15924_low_4
Description: NF15924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15924_low_4 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0179 (2 HSPs) |
| | |
|
| [»] scaffold0912 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0007 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 182425 - 182280
Alignment:
| Q |
106 |
gtgtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggt |
205 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
182425 |
gtgtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgtttcagacaggt |
182326 |
T |
|
| Q |
206 |
gggtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
182325 |
gggtgtggttgcctgaccctgttgagggttacactgttcgtggttc |
182280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 20395892 - 20395747
Alignment:
| Q |
106 |
gtgtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggt |
205 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20395892 |
gtgtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgtttcagacaggt |
20395793 |
T |
|
| Q |
206 |
gggtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
20395792 |
gggtgtggttgcctgaccctgttgagggttacactgttcgtggttc |
20395747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 42778532 - 42778387
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
42778532 |
gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattctgtttcagataggtgg |
42778433 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcat |
253 |
Q |
| |
|
|| ||||||||||| ||| ||| ||||||| | ||||||||||||| |
|
|
| T |
42778432 |
gtttggttgccagatcctattgtgggttactctgttcgcggttcat |
42778387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 34979380 - 34979273
Alignment:
| Q |
3 |
actatcgttatgagttcatctttgacagtgtgaaaatgtggcagaaaatttgaacaatgtaaacaaattaataagacgctctacacgtttcttgatgtca |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34979380 |
actatcgttatgagttcatctttaacagtgtgaaaatgtggcagaaaatttgaacaatgtaaacaaattaataagatgctctacacgtttcttgatgtca |
34979281 |
T |
|
| Q |
103 |
aatgtgtg |
110 |
Q |
| |
|
|||||||| |
|
|
| T |
34979280 |
aatgtgtg |
34979273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 53486799 - 53486949
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
53486799 |
gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcgagattttgtttcagacaggtga |
53486898 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac |
258 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| | ||||| ||||||| |||| |
|
|
| T |
53486899 |
gtgtggttgccagaccctattgtgggttactctgttcgtggttcatatcac |
53486949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 108 - 259
Target Start/End: Complemental strand, 53780339 - 53780188
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || || ||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
53780339 |
gtggaggaggaggttgtgggcatgggaggaggaggaattataggagtatagggctttattgactgatgtttctctgcaagattttgtttcagacaggtgg |
53780240 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact |
259 |
Q |
| |
|
|||||||||||||| ||| || |||||||||| ||||||||||||| ||||| |
|
|
| T |
53780239 |
gtgtggttgccagatcctattcagggttacactgttcgcggttcatatcact |
53780188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 18106402 - 18106552
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
18106402 |
gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg |
18106501 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac |
258 |
Q |
| |
|
|||||||||||||||||| | | ||||||| | |||| ||||||| |||| |
|
|
| T |
18106502 |
gtgtggttgccagaccctttggtgggttactctgttcttggttcatatcac |
18106552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 34322165 - 34322315
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
34322165 |
gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagagccttattgactgatgtttctttgcaagattttgtttccgacaggtgg |
34322264 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac |
258 |
Q |
| |
|
|||||||||||||||||| | | ||||||| | ||||| ||||||| |||| |
|
|
| T |
34322265 |
gtgtggttgccagaccctttggtgggttactctgttcgtggttcatatcac |
34322315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 10563179 - 10563298
Alignment:
| Q |
132 |
ggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgag |
231 |
Q |
| |
|
|||||| || || ||| ||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| ||| || || |
|
|
| T |
10563179 |
ggaggaggaggaattagaggagtgtagggctttattgactgatgtttctctgcaagattttgttttagacaggtgggtgtggttgccagatcctattcag |
10563278 |
T |
|
| Q |
232 |
ggttacacagttcgcggttc |
251 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
10563279 |
ggttacactgttcgcggttc |
10563298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 30273704 - 30273808
Alignment:
| Q |
154 |
tgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcat |
253 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| | ||||| ||||||| |
|
|
| T |
30273704 |
tgtagggccttattgattgatatttttttgcaagattttgtttcagacaggtgggtgtggttgccagacccttttgtgggttactctgttcgtggttcat |
30273803 |
T |
|
| Q |
254 |
ctcac |
258 |
Q |
| |
|
|||| |
|
|
| T |
30273804 |
atcac |
30273808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 23680456 - 23680306
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||| | ||||||| ||||||||| || |||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
23680456 |
gtggaggagggggttgtgggtttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgctagattctgtttcagacaggtgg |
23680357 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
23680356 |
gtgtggttgccagaccctgttgagggttacactgttcgcggttcatatcac |
23680306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 17659125 - 17658980
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||| |||||||||||| |||||||||||||||||| ||| |||||||||||| || |||||| |
|
|
| T |
17659125 |
gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggttttattgactgatgtttctctgctagattttgtttctgacaggtgg |
17659026 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcat |
253 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| ||| | ||||||| |
|
|
| T |
17659025 |
gtgtggttgcttgaccctattgagggttacactgtttgtggttcat |
17658980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 45255675 - 45255817
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| || |||||||||||||| || |||||| |||||| ||||| || ||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45255675 |
gtggaggaggaggttatgggcttgggaggaggaggagttagaggagt-tagggttttgttggctgatgtttctttgcaagattttgtttcagacaggtgg |
45255773 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
|||||||||||||||||| ||||||| || || ||||||||||| |
|
|
| T |
45255774 |
gtgtggttgccagaccctattgagggctatactgttcgcggttc |
45255817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 248
Target Start/End: Complemental strand, 36157451 - 36157311
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| |||||| ||||||||||| | ||| || ||||||||||||| | | | | ||||||| | |||| |
|
|
| T |
36157451 |
gtggaggaggagtttgtgggcgtgggaggaagaggagttagaggagtgtaggactttactgcttgatgtttctttgtatgctaatatttcagacaagtgg |
36157352 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcgg |
248 |
Q |
| |
|
|| ||||| || |||||| ||| || ||| |||||||||| |
|
|
| T |
36157351 |
gtttggttaccggacccttctgaagggtactcagttcgcgg |
36157311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 20208565 - 20208708
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| |||||| |
|
|
| T |
20208565 |
gtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttatgtttcagacaggtgg |
20208664 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20208665 |
gtgtggttgccagaccctgttgagggttacactgttcgcggttc |
20208708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 259
Target Start/End: Complemental strand, 6049517 - 6049366
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| || | |||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
6049517 |
gtggaggaggaggttataggcttgggagaaggaggagttaaaggagtgtagggctttattgactgatgtttctttgcaagattttttttccgacaggtgg |
6049418 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact |
259 |
Q |
| |
|
||||||||||||||||||||| ||||||| || ||||||||||||| ||||| |
|
|
| T |
6049417 |
gtgtggttgccagaccctgttaagggttatactgttcgcggttcatatcact |
6049366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 108 - 253
Target Start/End: Original strand, 4415546 - 4415691
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
4415546 |
gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg |
4415645 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcat |
253 |
Q |
| |
|
|||||||||||||||||| | | ||||||| | ||||| ||||||| |
|
|
| T |
4415646 |
gtgtggttgccagaccctttggtgggttactctgttcgtggttcat |
4415691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 108 - 253
Target Start/End: Original strand, 7000611 - 7000756
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
||||| |||||| |||||| |||||||| | || |||||| ||||||||||||| ||||||| |||||||||| ||| ||||| ||||||||| | |||| |
|
|
| T |
7000611 |
gtggaagaggaggttgtggtcttgggagaaggaggagttagaggagtgtagggctttattgattgatgtttctctgctagattctgtttcagacaagtgg |
7000710 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcat |
253 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
7000711 |
gtgtggttgccagaccccactgagggttacactgttcgcggttcat |
7000756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 108 - 259
Target Start/End: Complemental strand, 47537562 - 47537411
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||| | ||| ||||||||||| ||| |||||| |
|
|
| T |
47537562 |
gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttttctgctagattttgttttagacaggtgg |
47537463 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
47537462 |
gtgtggttgccagaccctgttgagggttacactgttcgtggttcatatcact |
47537411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 108 - 251
Target Start/End: Complemental strand, 26846161 - 26846018
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| |||||| |
|
|
| T |
26846161 |
gtgggggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgg |
26846062 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
26846061 |
gtgtggttgcctgaccctgttgagggttacactgttcgcggttc |
26846018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 48192093 - 48191943
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
48192093 |
gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg |
48191994 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac |
258 |
Q |
| |
|
|||||||| ||||||||| | | ||||||| | ||||| ||||||| |||| |
|
|
| T |
48191993 |
gtgtggtttccagaccctttggtgggttactctgttcgtggttcatatcac |
48191943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 50544515 - 50544375
Alignment:
| Q |
111 |
gaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtg |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| ||||||||| | | |||||||||||||||||| ||||||| ||||||||||| || |||||| |
|
|
| T |
50544515 |
gaggaggaggttgtgggcttgggaggaagaggagttagaggagtgtatgactttattgactgatgtttctctgcaagaatttgtttcagacagatgggtg |
50544416 |
T |
|
| Q |
211 |
tggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
||| |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
50544415 |
tggctgccagaccctggtgagggttactcagttcgcggttc |
50544375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 33121235 - 33121313
Alignment:
| Q |
180 |
tttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac |
258 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||| | | ||||||| | ||||| ||||||| |||| |
|
|
| T |
33121235 |
tttgcaagattttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcgtggttcatatcac |
33121313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 43121512 - 43121622
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
||||||| || |||||||||| |||||||| || ||||||||||| |||||| | |||||| |||||||||| |||| | | ||||||||| | |||| |
|
|
| T |
43121512 |
gtggaggcggggattgtgggcgtgggaggaggaggagttaaaggaatgtaggactttattgcttgatgtttctctgcatgctaatgtttcagacaagtgg |
43121611 |
T |
|
| Q |
208 |
gtgtggttgcc |
218 |
Q |
| |
|
|| |||||||| |
|
|
| T |
43121612 |
gtttggttgcc |
43121622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 23818863 - 23818763
Alignment:
| Q |
116 |
ggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggtt |
215 |
Q |
| |
|
||||||||||||| |||||||| || |||||| |||| |||| | | |||||| ||||||||||||||| | | ||||||||| |||||||| ||||| |
|
|
| T |
23818863 |
ggagattgtgggcgtgggaggaggaggagttagaggaatgtatgactttattgcttgatgtttctttgcatgttaatgtttcagacaggtgggtttggtt |
23818764 |
T |
|
| Q |
216 |
g |
216 |
Q |
| |
|
| |
|
|
| T |
23818763 |
g |
23818763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 19222260 - 19222299
Alignment:
| Q |
196 |
tcagataggtgggtgtggttgccagaccctgttgagggtt |
235 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19222260 |
tcagacaggtgggtgtggttgccagaccctgttgagggtt |
19222299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 27924921 - 27924989
Alignment:
| Q |
117 |
gagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgca |
185 |
Q |
| |
|
||||||||||||||||||||| || | |||| ||||||||| | | |||||| ||||||||||||||| |
|
|
| T |
27924921 |
gagattgtgggcttgggaggaggaggtgttagaggagtgtaagactttattgcttgatgtttctttgca |
27924989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 17079037 - 17079187
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
17079037 |
gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagcgtagggctttattgactgatgtttctttgcaagattttgtttcagacaagtgg |
17079136 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac |
258 |
Q |
| |
|
|||||||||||||||| |||||||||||| || ||||| ||||||| |||| |
|
|
| T |
17079137 |
gtgtggttgccagaccttgttgagggttatactgttcgtggttcatatcac |
17079187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 17873664 - 17873807
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || || ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
17873664 |
gtggaggaggaggttgtgggcatgggaggaggaggaattagaggagtgtagggctttattgactgatgtttctctgcaagattttgtttcagacaggtgg |
17873763 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
|||||||||||||| ||| || |||||||||| ||||||||||| |
|
|
| T |
17873764 |
gtgtggttgccagatcctattcagggttacactgttcgcggttc |
17873807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 18051295 - 18051438
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||| |||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
18051295 |
gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactaatgtttatttgcaagattttatttcagacaggtgg |
18051394 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
||||||||| | |||||||||||||||||||| ||||| ||||| |
|
|
| T |
18051395 |
gtgtggttgtctgaccctgttgagggttacactgttcgtggttc |
18051438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 253
Target Start/End: Original strand, 9199098 - 9199243
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
9199098 |
gtggaggaggaggttgtgggcttgggaggaggagaagttagaggagtgtagggcattattgactgatgtttctttgcgagattctgtttcagacaggtgg |
9199197 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcat |
253 |
Q |
| |
|
|| ||||||||||||| | ||| ||||||| | ||||||||||||| |
|
|
| T |
9199198 |
gtttggttgccagaccatattgtgggttactctgttcgcggttcat |
9199243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 11060708 - 11060848
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||| |||||||||||| |||||||||||| ||||| ||| ||||| |||||| || |||||| |
|
|
| T |
11060708 |
gtggaggaggaggttgtgggcttgggaggagga---gttagaggagtgtagggatttattgactgatatttctctgctagattatgtttctgacaggtgg |
11060804 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
11060805 |
gtgtggttgcctgacccttttgagggttacactgttcgcggttc |
11060848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 649912 - 650000
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgttt |
196 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
649912 |
gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgttt |
650000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 17708273 - 17708123
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
17708273 |
gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagacagatgg |
17708174 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac |
258 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||| | ||||| ||||||| |||| |
|
|
| T |
17708173 |
gtgtggttgccaaacccttttgtgggttactctgttcgtggttcatatcac |
17708123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 108 - 253
Target Start/End: Original strand, 10711007 - 10711152
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||||||||| || || |||||| ||||||||||| | ||||| |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
10711007 |
gtggaggaggaggttgtgggcttgggaagaggaggagttagaggagtgtaggactttattaactgatgtttctttccaagattttgtttcagacaggtgg |
10711106 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
10711107 |
gtgtggttgccagaccctgttgagggttacactgttcgtggttcat |
10711152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 259
Target Start/End: Original strand, 47106527 - 47106677
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| || |||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
47106527 |
gtggaggaggaggttatgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgtttccgacaggtgg |
47106626 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact |
259 |
Q |
| |
|
|||||||||||||||||||||||||| | || ||||||||||||| ||||| |
|
|
| T |
47106627 |
gtgtggttgccagaccctgttgaggggt-tactgttcgcggttcatatcact |
47106677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 30110771 - 30110921
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||| ||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
30110771 |
gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttctttgactgatgtttctctacaagattttgtttcagataggtgg |
30110870 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac |
258 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||||||||| ||||||| |||| |
|
|
| T |
30110871 |
gtgtggttaccagacccttttgaggggtacacagttcggggttcatatcac |
30110921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 26720921 - 26720812
Alignment:
| Q |
142 |
gagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacag |
241 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||| | |||||||||||||||||||||| | |
|
|
| T |
26720921 |
gagttagaggagtgtagggctttattgactgatgtttctctgcaagtttttgtttcagacaggtgggtgtggtcgtcagaccctgttgagggttacactg |
26720822 |
T |
|
| Q |
242 |
ttcgcggttc |
251 |
Q |
| |
|
|||||||||| |
|
|
| T |
26720821 |
ttcgcggttc |
26720812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 21335216 - 21335357
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| ||||||||| | | |||||| ||||||||||||||| | | ||||||||| |||||| |
|
|
| T |
21335216 |
gtggaggcggagattgtgggcttgggaggaagaggagttagaggagtgtaagactttattgcttgatgtttctttgcaggctaatgtttcagacaggtgg |
21335315 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggt |
249 |
Q |
| |
|
|| ||||||| |||||| |||| || ||| ||||||||||| |
|
|
| T |
21335316 |
gtatggttgcaggacccttttgaagggtactcagttcgcggt |
21335357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 28097809 - 28097916
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| |||| | ||||||||||| |||||| |||||||| |||| | | | |||||||||||||||| |
|
|
| T |
28097809 |
gtggaggaggagactgtgggggtgggaggaagaggagtaagaggagtgtaggaatttattgcttgatgtttatttgtatgctaatgtttcagataggtgg |
28097908 |
T |
|
| Q |
208 |
gtgtggtt |
215 |
Q |
| |
|
|| ||||| |
|
|
| T |
28097909 |
gtttggtt |
28097916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 1380376 - 1380231
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1380376 |
gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtaaggccttattgactgatgtttctttgcaagattatgtttcagataggtgg |
1380277 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcat |
253 |
Q |
| |
|
|| ||||||||||| ||| ||| ||||||| | ||||||||||||| |
|
|
| T |
1380276 |
gtttggttgccagatcctattgtgggttactctgttcgcggttcat |
1380231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 2999594 - 2999744
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
2999594 |
gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg |
2999693 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac |
258 |
Q |
| |
|
|||||||||||||||||| | | ||||||| | |||| ||||||| |||| |
|
|
| T |
2999694 |
gtgtggttgccagaccctttggtgggttactctgttcttggttcatatcac |
2999744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 11028164 - 11028063
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
||||||||||||| | | || ||||||||||| |||||| ||||||||||| | |||||| ||||||||||||| | | | ||||||||| |||||| |
|
|
| T |
11028164 |
gtggaggaggagactatcggtgtgggaggaagaggagttagaggagtgtaggactttattgcgtgatgtttctttgtatgctaatgtttcagacaggtgg |
11028065 |
T |
|
| Q |
208 |
gt |
209 |
Q |
| |
|
|| |
|
|
| T |
11028064 |
gt |
11028063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 251
Target Start/End: Complemental strand, 7822 - 7679
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| |||||| |
|
|
| T |
7822 |
gtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgg |
7723 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
7722 |
gtgtggttgcctgaccctgttgagggttacactgttcgcggttc |
7679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 108 - 251
Target Start/End: Complemental strand, 12756 - 12613
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| |||||| |
|
|
| T |
12756 |
gtggtggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgg |
12657 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
12656 |
gtgtggttgcctgaccctgttgagggttacactgttcgcggttc |
12613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 108 - 251
Target Start/End: Complemental strand, 4077569 - 4077426
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||| |||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
4077569 |
gtggaggaggaggttgtgggcttgggaggaagaggagttagaggagtgtagggctttattgtttgatgtgtctttgcaagattttgtgtcagacaggtgg |
4077470 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
|||||||||| |||||||| |||||| || |||||||||||||| |
|
|
| T |
4077469 |
gtgtggttgctagaccctgctgagggctatacagttcgcggttc |
4077426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 34231993 - 34231843
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||| ||||| |||||||| |||||||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||| |
|
|
| T |
34231993 |
gtggagtaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgaatgatgtttctttgcaagattttgtttccgacaggtgg |
34231894 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac |
258 |
Q |
| |
|
|||||||||||||||||| | | |||||| | ||||| ||||||| |||| |
|
|
| T |
34231893 |
gtgtggttgccagaccctttggtaggttactctgttcgtggttcatatcac |
34231843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 7458517 - 7458660
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg |
207 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || || ||| ||||||||||||| ||||| ||| |||||||| ||||||||| |||||| || |||||| |
|
|
| T |
7458517 |
gtggaggaggaggttgtgggcatgggaggaggaggaattagaggagtgtagggctttattaactaatgtttctctgcaagattctgtttccgacaggtgg |
7458616 |
T |
|
| Q |
208 |
gtgtggttgccagaccctgttgagggttacacagttcgcggttc |
251 |
Q |
| |
|
|||||||||||||| ||| || |||||||||| ||||||||||| |
|
|
| T |
7458617 |
gtgtggttgccagatcctattcagggttacactgttcgcggttc |
7458660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 36228010 - 36228049
Alignment:
| Q |
122 |
tgtgggcttgggaggaagatgagttaaaggagtgtagggc |
161 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
36228010 |
tgtgggcgtgggaggaagatgtgttaaaggagtgtagggc |
36228049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0912
Description:
Target: scaffold0912; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 2719 - 2799
Alignment:
| Q |
108 |
gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagat |
189 |
Q |
| |
|
|||||||||||| |||||||||||| |||| || |||||| |||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
2719 |
gtggaggaggaggttgtgggcttgg-aggaggaggagttagaggagtatagggctttattgactgatgtttctttgcaagat |
2799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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