View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15925_high_2 (Length: 708)
Name: NF15925_high_2
Description: NF15925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15925_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 647
Target Start/End: Complemental strand, 41232081 - 41231438
Alignment:
| Q |
18 |
aggagttagtttatgcacacttttttccctttggaagtagttgcatactttcattttgtttgttcacaaagatgtgctgattagacatgccaacccccat |
117 |
Q |
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| T |
41232081 |
aggagttagtttatgcacacttttttccctttggaagtagttgcatactttcattttgtttgttcacaaagatgtgctgattagacatgccaacccccat |
41231982 |
T |
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| Q |
118 |
tgagttacatttttcctccacatttagaatgttaaagagtcttccttactacnnnnnnnggttcagcagttttccttactatcattcgatttggctatgt |
217 |
Q |
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| T |
41231981 |
tgagttacatttttcctccacatttagaatgttaaagagtcttccttactgctttttttggttcagcagttttccttaatatcattcgatttggctatgt |
41231882 |
T |
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| Q |
218 |
gtggtacaaatgattacgaactccactttttatttattgattttgagtgtgtaattagaagtttgaattttcactatggcattggagtgttactccttat |
317 |
Q |
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| T |
41231881 |
gtggtacaaatgattacgaactccactttttatttattgattttgagtgtgtaattagaagtttgaattttcactatggcattggagtgttactccttat |
41231782 |
T |
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| Q |
318 |
tgatggtttacaaataggttccaaattgattagccattttatgtatttccttttttactcaaccatctttatacaacagttaaaaaattaatcaagtgat |
417 |
Q |
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| T |
41231781 |
tgatggtttacaaataggttccaaattgattagccattttatgtatttccttttttactcgaccatc-ttatacaacagttaaaaaattaatcaagtgat |
41231683 |
T |
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| Q |
418 |
tcaactcaagtgtttttggtaggatccccttcccctttgaacagaagttaacaccataaaaagattaacaattagaaaaaagtgtgt------------- |
504 |
Q |
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| T |
41231682 |
tcaactcaagtgtttttggtaggatccccttcccctttgaacagaagttaacaccataaaaaaattaacaattagacaaaagtgtgtgcatactgtacac |
41231583 |
T |
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| Q |
505 |
--actggctcctacctagtacatagaaaaaacgtaaaacctgaatttaaatatgtgcctattagtaacacattttgggacactacaacaaaattattact |
602 |
Q |
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| T |
41231582 |
aaactggctcctacctagtacatagaaaaaacgtaaaacctgaatttaaatatgtgcctattagtaacacattttgggacactacaacaaaattattact |
41231483 |
T |
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| Q |
603 |
tgatagtgactgtgacaacacatttcaatttgttcttcttgtgtg |
647 |
Q |
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| T |
41231482 |
tgatagtgactgtgacaacacatttcaatttgttcttcttatgtg |
41231438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 661 - 701
Target Start/End: Complemental strand, 41231323 - 41231283
Alignment:
| Q |
661 |
actattgagaactcttatatcaaaaagccatatattcttgg |
701 |
Q |
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| T |
41231323 |
actaatgagaactcttatatcaaaaagccatatattcttgg |
41231283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 41531248 - 41531153
Alignment:
| Q |
24 |
tagtttatgcacacttttttccctttggaagtagttgcat--------actttcattttgtttgttcacaaagatgtgctgattagacatgccaac |
111 |
Q |
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| T |
41531248 |
tagtttctacacacgtttttccctttggaagtagttgcatacttggttacttacatgtcgtttgttcacaaagatgtgctgatcagacatgacaac |
41531153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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