View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15925_high_5 (Length: 475)

Name: NF15925_high_5
Description: NF15925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15925_high_5
NF15925_high_5
[»] chr2 (5 HSPs)
chr2 (5-311)||(8019915-8020221)
chr2 (311-434)||(8019760-8019883)
chr2 (174-310)||(22391284-22391420)
chr2 (335-434)||(22391113-22391209)
chr2 (19-77)||(22391574-22391632)
[»] chr3 (53 HSPs)
chr3 (155-310)||(28132105-28132260)
chr3 (155-310)||(28510616-28510771)
chr3 (155-310)||(28147889-28148044)
chr3 (155-310)||(28183922-28184077)
chr3 (155-310)||(27975507-27975662)
chr3 (155-310)||(28081898-28082053)
chr3 (158-310)||(28002333-28002485)
chr3 (155-310)||(28159358-28159513)
chr3 (155-310)||(28481444-28481599)
chr3 (155-310)||(27918527-27918682)
chr3 (155-257)||(28053683-28053785)
chr3 (155-257)||(28064108-28064210)
chr3 (155-310)||(27460990-27461142)
chr3 (155-310)||(28035583-28035738)
chr3 (208-310)||(17746167-17746269)
chr3 (208-310)||(19047487-19047589)
chr3 (155-310)||(11418886-11419041)
chr3 (208-310)||(27392230-27392332)
chr3 (215-310)||(12146179-12146274)
chr3 (210-310)||(18026466-18026566)
chr3 (208-310)||(27347569-27347671)
chr3 (17-79)||(28159634-28159696)
chr3 (16-86)||(28148170-28148242)
chr3 (17-78)||(28184199-28184260)
chr3 (226-310)||(26114998-26115082)
chr3 (226-310)||(26142310-26142394)
chr3 (226-310)||(26210106-26210190)
chr3 (215-310)||(27376362-27376457)
chr3 (26-153)||(28035806-28035932)
chr3 (335-399)||(28081765-28081826)
chr3 (336-435)||(27918358-27918454)
chr3 (226-310)||(26180615-26180699)
chr3 (21-81)||(28481226-28481286)
chr3 (21-81)||(28510407-28510467)
chr3 (226-305)||(26237350-26237429)
chr3 (17-84)||(28053934-28054000)
chr3 (17-84)||(28064359-28064425)
chr3 (335-405)||(18026641-18026708)
chr3 (226-310)||(26131578-26131662)
chr3 (21-77)||(28082191-28082247)
chr3 (335-408)||(28147744-28147814)
chr3 (26-156)||(28002553-28002682)
chr3 (335-407)||(28131961-28132030)
chr3 (260-310)||(28481909-28481959)
chr3 (335-408)||(17746344-17746414)
chr3 (335-408)||(19047664-19047734)
chr3 (342-399)||(26180769-26180823)
chr3 (335-408)||(27461214-27461284)
chr3 (335-408)||(27975362-27975432)
chr3 (344-399)||(26210262-26210314)
chr3 (344-399)||(26237506-26237558)
chr3 (335-405)||(11418747-11418814)
chr3 (16-80)||(27460800-27460864)
[»] scaffold0257 (3 HSPs)
scaffold0257 (155-310)||(17484-17639)
scaffold0257 (120-156)||(17704-17740)
scaffold0257 (53-85)||(17766-17798)
[»] scaffold0043 (2 HSPs)
scaffold0043 (174-315)||(54687-54828)
scaffold0043 (344-429)||(54907-54989)
[»] chr7 (3 HSPs)
chr7 (155-310)||(8693277-8693432)
chr7 (16-81)||(8693152-8693216)
chr7 (344-434)||(8693519-8693606)


Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 5 - 311
Target Start/End: Complemental strand, 8020221 - 8019915
Alignment:
Q  5 gatgtccaagaatatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaacc 104  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020221 gatgtgcaataatatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaacc 8020122  T
Q  105 attaatatcaaatatgaagtctgctgttgatgctgaagccagggatagttttggtagattttcaaatattacaactttcagatttggaatctccactttg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020121 attaatatcaaatatgaagtctgctgttgatgctgaagccagggatagttttggtagattttcaaatattacaactttcagatttggaatctccactttg 8020022  T
Q  205 tgatcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020021 tgatcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaa 8019922  T
Q  305 agacatg 311  Q
    |||||||    
T  8019921 agacatg 8019915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 311 - 434
Target Start/End: Complemental strand, 8019883 - 8019760
Alignment:
Q  311 gttcctagctttggaaagcatgtttttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatct 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8019883 gttcctagctttggaaagcatgtttttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattctttgattctcatct 8019784  T
Q  411 taagtaagtgaggtagacatctta 434  Q
    ||||||||||||||||||||||||    
T  8019783 taagtaagtgaggtagacatctta 8019760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 174 - 310
Target Start/End: Complemental strand, 22391420 - 22391284
Alignment:
Q  174 tacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagc 273  Q
    ||||||||| |||||||| || |  ||||| |||||| |  |||||| |||||||||||||||||||| ||||||||| ||||| |  |||   | ||||    
T  22391420 tacaacttttagatttggcatattgactttctgatcaccttcttcacatacaaatatttcctctagcttatatgcttcacttatcactagagcctctagc 22391321  T
Q  274 tcaggaagctctttacatatggagattggaaagacat 310  Q
    |||||||||||||||||||||||||||||||||||||    
T  22391320 tcaggaagctctttacatatggagattggaaagacat 22391284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 22391209 - 22391113
Alignment:
Q  335 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagacatctta 434  Q
    |||||||||||||||| |||||||||||||   |||||||||| ||| || |||||||||||||| |||||||| | ||| || || |||||||| ||||    
T  22391209 tttgaggattttttattctccaaatcatct---tcaataatatgcttcaattctttgcattcttcaattctcatatcaagcaactgtggtagacacctta 22391113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 22391632 - 22391574
Alignment:
Q  19 tgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtacc 77  Q
    |||||||| ||||||||||| |||||||| ||| |||||||||| | | ||||||||||    
T  22391632 tgtaattaattacagccaacatgtaatagatttcaaaaatattggacaaagtgtgtacc 22391574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 9e-71; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 28132260 - 28132105
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  28132260 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcgtctgcttctct 28132161  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  28132160 tatgatcagataatatagctcaggaagctctttacatacggagattggaaagacat 28132105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 155 - 310
Target Start/End: Original strand, 28510616 - 28510771
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  28510616 ttggtagattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcatctgcttctct 28510715  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||||||||||  | ||||||| |||||||||||| |||||||||||||||||||||    
T  28510716 tatgatcagaacaattagctctggaagctctttagatatggagattggaaagacat 28510771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 28148044 - 28147889
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||||||    
T  28148044 ttggtagattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaaattcacttacaaatatttcctctaactcatctgcttctct 28147945  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||||||||||   ||||||||||||||||||||| |||||||||||||||| ||||    
T  28147944 tatgatcagaacctttagctcaggaagctctttagatatggagattggaaacacat 28147889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 28184077 - 28183922
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||||| ||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  28184077 ttggtagattttcaaatactacacattctagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctccagctcatctgcttctct 28183978  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  28183977 tatcatcagaacatttagctcaggaagctctttacatatggagattggaaacacat 28183922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 27975662 - 27975507
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  27975662 ttggtagattttcaaatattacaactatcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcagctgcttctct 27975563  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||| |  |||   | ||||||| |||||||||||||||||||||||||||| ||||    
T  27975562 tatcaagagaacctctagctcaagaagctctttacatatggagattggaaacacat 27975507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 28082053 - 28081898
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||| ||||||||||||| ||||| |   |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||    
T  28082053 ttggaagattttcaaatactacaaatcgtagatatggaatctccactttgtgatcatcaccttcgcttacaaatatttcctctaactcatctgcttctct 28081954  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  28081953 tatgatcagataatttagctcaggaagctctttatatacggagattggaaagacat 28081898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 158 - 310
Target Start/End: Complemental strand, 28002485 - 28002333
Alignment:
Q  158 gtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctcttat 257  Q
    ||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||    
T  28002485 gtagattttcaaatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctacctcgtctgcttctcttat 28002386  T
Q  258 gatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    | |||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  28002385 ggtcagaacatttagctcaggaagctctttacatatggagattggaaacacat 28002333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 28159513 - 28159358
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||||| ||||  ||  ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| || ||||||    
T  28159513 ttggtagattttcaaatactacacattctagatttggaatcttcactttctgatcatcaccttcaattacaaatatttcctctagctcatctgattctct 28159414  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  28159413 tatcatcagaacatttagctcaggaagctctttacatatggagattggaaatacat 28159358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 155 - 310
Target Start/End: Original strand, 28481444 - 28481599
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||| | |||||||||    
T  28481444 ttggtagattttcaaatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctcgaactcgtctgcttctct 28481543  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    |||||| |||  ||||||||  |||||||||||| |||||||||||||||| ||||    
T  28481544 tatgatgagaacatttagctttggaagctctttagatatggagattggaaacacat 28481599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 27918682 - 27918527
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||||| || |  ||  |||||||||||||||||||| ||||||||||||||| || |||||||||| || ||||||| |||||||||    
T  27918682 ttggtagattttcaaatactagatattctagatttggaatctccactttctgatcatcaccttcatttgcaaatatttcatccagctcatctgcttctct 27918583  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||| |  ||| | |||||||||||||| ||||||||||||||||||||||||||||    
T  27918582 tatcactagacactttagctcaggaaggtctttacatatggagattggaaagacat 27918527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 28053785 - 28053683
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  28053785 ttggtagattttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctct 28053686  T
Q  255 tat 257  Q
    |||    
T  28053685 tat 28053683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 28064210 - 28064108
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  28064210 ttggtagattttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctct 28064111  T
Q  255 tat 257  Q
    |||    
T  28064110 tat 28064108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 155 - 310
Target Start/End: Original strand, 27460990 - 27461142
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    ||||||||||| |||||| ||||| ||| |||||||||||||||| ||| ||||||||   |||||||||||||||||||||||||||   |||||||||    
T  27460990 ttggtagatttacaaatactacaagttttagatttggaatctccagtttctgatcatctttttcacttacaaatatttcctctagctc---tgcttctct 27461086  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    |||||| |||   | ||||||||||||||||||||||||||| |||||||||||||    
T  27461087 tatgattagaacctctagctcaggaagctctttacatatggacattggaaagacat 27461142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 28035738 - 28035583
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||| | ||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||||| || | || || |||||||||    
T  28035738 ttggtagattttcaaacactacaaattttagatttggaatctccactttctgatcatcaccttcacttgcaaatatttcttccatcttatctgcttctct 28035639  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||| || |||   | || ||  ||||||||||||||||||||||||||||||||||    
T  28035638 tatcattagagcttctaacttgggaagctctttacatatggagattggaaagacat 28035583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 17746167 - 17746269
Alignment:
Q  208 tcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaaga 307  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| || |||   | ||||||||||||||||||||||||||||||||||||||    
T  17746167 tcatcaccttcacttccaaatatttcctctagctcatatgcttctcttatcattagaccctctagctcaggaagctctttacatatggagattggaaaga 17746266  T
Q  308 cat 310  Q
    |||    
T  17746267 cat 17746269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 19047487 - 19047589
Alignment:
Q  208 tcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaaga 307  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| || |||   | ||||||||||||||||||||||||||||||||||||||    
T  19047487 tcatcaccttcacttccaaatatttcctctagctcatatgcttctcttatcattagaccctctagctcaggaagctctttacatatggagattggaaaga 19047586  T
Q  308 cat 310  Q
    |||    
T  19047587 cat 19047589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 11419041 - 11418886
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||| ||||||||||||| || || ||| ||||| ||||||||   ||| |||| |||| |||||||||||||||||||||||||||||| ||| |||||    
T  11419041 ttggcagattttcaaatactaaaaatttaagattcggaatctcgcttttctgatgatcatcttcacttacaaatatttcctctagctcatctgcgtctct 11418942  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||| ||||||  || ||||||||||||||||||||| | |||||||||||| ||||    
T  11418941 tatcatcagaacatatagctcaggaagctctttacacagggagattggaaaaacat 11418886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 27392230 - 27392332
Alignment:
Q  208 tcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaaga 307  Q
    |||||| |||| | ||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| |    
T  27392230 tcatcaacttcgcatacaaatatttcctctagctcatctgcttctcttatgatcagaacctttagctcaggaagctctttacatatggagattggaaaca 27392329  T
Q  308 cat 310  Q
    |||    
T  27392330 cat 27392332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 12146274 - 12146179
Alignment:
Q  215 cttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    |||||| ||||||||||||||||||||||| |||||||||||| || ||| | | |||||||||||||||||||||||||||||||||||| ||||    
T  12146274 cttcacatacaaatatttcctctagctcatttgcttctcttataattagaaactgtagctcaggaagctctttacatatggagattggaaacacat 12146179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 18026466 - 18026566
Alignment:
Q  210 atcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagaca 309  Q
    |||| |||||| ||||||||||||||||||||  | |||||||  |||||| | |   ||||||||||||||||||||| ||||||||||||||||||||    
T  18026466 atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaagaca 18026565  T
Q  310 t 310  Q
    |    
T  18026566 t 18026566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 27347671 - 27347569
Alignment:
Q  208 tcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaaga 307  Q
    |||||||||| || ||||||||||||||| |  || | || |||||||||||| |||   | |||||||||||||||||||||||||||||||||||| |    
T  27347671 tcatcacctttacatacaaatatttcctccaattcttctgattctcttatgattagagcctctagctcaggaagctctttacatatggagattggaaaca 27347572  T
Q  308 cat 310  Q
    |||    
T  27347571 cat 27347569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 28159696 - 28159634
Alignment:
Q  17 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgt 79  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  28159696 tatgtaataatttacagcaaacatgtaatagtttttaaaaatattggatagagtgtgtaccgt 28159634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 28148242 - 28148170
Alignment:
Q  16 atatgtaattatttacagccaacgtgtaatagtttttaaaa--atattgtatagagtgtgtaccgtagccaaa 86  Q
    |||||||||||||||| |||||| |||||||||||||||||  |||||| ||||||| |||||||||||||||    
T  28148242 atatgtaattatttacggccaacatgtaatagtttttaaaaatatattggatagagtctgtaccgtagccaaa 28148170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 28184260 - 28184199
Alignment:
Q  17 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccg 78  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  28184260 tatgtaataatttacagcaaacatgtaatagtttttaaaaatattggatagagtgtgtaccg 28184199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 26114998 - 26115082
Alignment:
Q  226 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    |||||||| |||| ||||| |||||||||||| |||| |   ||||||||||||||||||||||| ||||||| |||||||||||    
T  26114998 aatatttcttctaactcatttgcttctcttattatcataacctttagctcaggaagctctttacaaatggagactggaaagacat 26115082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 26142310 - 26142394
Alignment:
Q  226 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||||||||||||||||||| |||||||||||| | || |   ||||||| ||||| ||||||||| |||||||||||||||||||    
T  26142310 aatatttcctctagctcatttgcttctcttatcaacacagcctttagcttaggaaactctttacaaatggagattggaaagacat 26142394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 26210106 - 26210190
Alignment:
Q  226 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||||||||||||| ||||| |||||||||||| |||| |  |||||||||||||| ||||||||| ||||||| |||||| ||||    
T  26210106 aatatttcctctaactcatttgcttctcttattatcataacatttagctcaggaaactctttacaaatggagactggaaacacat 26210190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 27376457 - 27376362
Alignment:
Q  215 cttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    |||||| |||||||||||||||||||| || || |||| |||| |  |||   | ||||||||||||||||| |||||||||||||||||||||||    
T  27376457 cttcacatacaaatatttcctctagcttatctgattcttttatcactagactctctagctcaggaagctcttcacatatggagattggaaagacat 27376362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 28035932 - 28035806
Alignment:
Q  26 atttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatcaaatatgaagtc 125  Q
    ||||||||||||| | |||||||||| |||||||||| |||||||| ||||||||| |||||| || || ||||||||||  |||||||  |   ||||     
T  28035932 atttacagccaacatttaatagtttt-aaaaatattggatagagtgcgtaccgtagtcaaactcgccagaatataaaccagaaatatcattttcaaagtt 28035834  T
Q  126 tgctgttgatgctgaagccagggatagt 153  Q
    || |||||||| ||||||||| ||||||    
T  28035833 tgttgttgatgatgaagccagagatagt 28035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 28081826 - 28081765
Alignment:
Q  335 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 399  Q
    |||||||||||||||| |||||||||||||   |||||||||| |||||||||||||||||||||    
T  28081826 tttgaggattttttattctccaaatcatct---tcaataatatgctttaactctttgcattcttc 28081765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 27918454 - 27918358
Alignment:
Q  336 ttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagacatcttaa 435  Q
    ||||||||||||||| |||||||||||||   |||||||||| ||| ||||||||||||||||| ||||| || | ||| || || || |||||||||||    
T  27918454 ttgaggattttttattctccaaatcatct---tcaataatatacttcaactctttgcattcttcaattcttatatgaagcaactgcggcagacatcttaa 27918358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 26180615 - 26180699
Alignment:
Q  226 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||||||||||||||||||| |||||||||||| | || |   ||||||||||||| ||||||||| ||||||| |||||| ||||    
T  26180615 aatatttcctctagctcatttgcttctcttatcaacataacctttagctcaggaaactctttacaaatggagactggaaacacat 26180699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 28481226 - 28481286
Alignment:
Q  21 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 81  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||    
T  28481226 taataatttacagccaacatgtaatagttttaaaaaatattggatagaatgtgtaccgtag 28481286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 28510407 - 28510467
Alignment:
Q  21 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 81  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||    
T  28510407 taataatttacagccaacatgtaatagttttaaaaaatattggatagaatgtgtaccgtag 28510467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 26237350 - 26237429
Alignment:
Q  226 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaa 305  Q
    ||||||||||||| ||||| |||||||||||||| || |   ||||||||||||| ||||||||| ||||||| ||||||    
T  26237350 aatatttcctctaactcatttgcttctcttatgaacataacctttagctcaggaaactctttacaaatggagactggaaa 26237429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 28054000 - 28053934
Alignment:
Q  17 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagcca 84  Q
    |||||||| ||||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||    
T  28054000 tatgtaataatttacagccaacat-taatagtttttaagaatattggatagagtgtgtaccatagcca 28053934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 28064425 - 28064359
Alignment:
Q  17 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagcca 84  Q
    |||||||| ||||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||    
T  28064425 tatgtaataatttacagccaacat-taatagtttttaagaatattggatagagtgtgtaccatagcca 28064359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 405
Target Start/End: Original strand, 18026641 - 18026708
Alignment:
Q  335 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattct 405  Q
    |||||||||||||||| ||||||||||||   ||||||||||| ||| ||||||||||| ||||| |||||    
T  18026641 tttgaggattttttattctccaaatcatc---ttcaataatatgcttcaactctttgcaatcttcaattct 18026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 26131578 - 26131662
Alignment:
Q  226 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    |||||| |||||||||||| |||||| ||||| |||| |   ||||||| ||||| ||||||||| ||||||| |||||||||||    
T  26131578 aatattccctctagctcatttgcttcacttatcatcataacctttagcttaggaaactctttacaaatggagactggaaagacat 26131662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 28082247 - 28082191
Alignment:
Q  21 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtacc 77  Q
    |||| |||||||| |||| ||||||||||||||||||||||| ||||| ||||||||    
T  28082247 taataatttacagtcaacatgtaatagtttttaaaaatattggatagaatgtgtacc 28082191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 408
Target Start/End: Complemental strand, 28147814 - 28147744
Alignment:
Q  335 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 408  Q
    |||||||||||||||| ||||||||||||   ||||||||||| | | ||||| ||||||||||| ||||||||    
T  28147814 tttgaggattttttattctccaaatcatc---ttcaataatatgcctcaactcattgcattcttcaattctcat 28147744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 28002682 - 28002553
Alignment:
Q  26 atttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatcaaatatgaagtc 125  Q
    ||||||||||||| | |||||||||| |||||||||| |||||||||||||| | | |||||  |   | |  |||||||  |||||||  |  ||||||    
T  28002682 atttacagccaacatttaatagtttt-aaaaatattggatagagtgtgtaccctcgtcaaaccagaccgaacgtaaaccagaaatatcattttcgaagtc 28002584  T
Q  126 tgctgttgatgctgaagccagggatagtttt 156  Q
    ||||||||||||||||| ||| |||||||||    
T  28002583 tgctgttgatgctgaagtcagagatagtttt 28002553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 407
Target Start/End: Complemental strand, 28132030 - 28131961
Alignment:
Q  335 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctca 407  Q
    |||||||||||||||| ||||||||||||   |||||| |||| ||| || |||||||||||||| |||||||    
T  28132030 tttgaggattttttattctccaaatcatc---ttcaattatatgcttcaattctttgcattcttcaattctca 28131961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 28481909 - 28481959
Alignment:
Q  260 tcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    |||||| || |||||||||||| ||||||||||||||||||||||| ||||    
T  28481909 tcagatcatatagctcaggaaggtctttacatatggagattggaaacacat 28481959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 408
Target Start/End: Original strand, 17746344 - 17746414
Alignment:
Q  335 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 408  Q
    |||||||||||||||| |||||||||||||   |||| |||||   | ||||||||||||||||| ||||||||    
T  17746344 tttgaggattttttattctccaaatcatct---tcaaaaatatgtgtcaactctttgcattcttcaattctcat 17746414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 408
Target Start/End: Original strand, 19047664 - 19047734
Alignment:
Q  335 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 408  Q
    |||||||||||||||| |||||||||||||   |||| |||||   | ||||||||||||||||| ||||||||    
T  19047664 tttgaggattttttattctccaaatcatct---tcaaaaatatgtgtcaactctttgcattcttcaattctcat 19047734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 26180769 - 26180823
Alignment:
Q  342 attttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 399  Q
    ||||||||||||||||||||||   |||||| |||| ||| |||||||||||||||||    
T  26180769 attttttatcctccaaatcatc---ttcaatgatatgcttcaactctttgcattcttc 26180823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 408
Target Start/End: Original strand, 27461214 - 27461284
Alignment:
Q  335 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 408  Q
    |||||||| ||||| | |||||||||||   ||||||| |||| ||| ||||||||||||||||| ||||||||    
T  27461214 tttgaggagtttttgttctccaaatcat---attcaattatatgcttcaactctttgcattcttcaattctcat 27461284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 408
Target Start/End: Complemental strand, 27975432 - 27975362
Alignment:
Q  335 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 408  Q
    |||||||||||| ||| |||||||||||   ||||||| |||| ||| ||||||||||| ||||| ||||||||    
T  27975432 tttgaggattttctattctccaaatcat---attcaattatatgcttcaactctttgcactcttcaattctcat 27975362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 26210262 - 26210314
Alignment:
Q  344 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 399  Q
    ||||||||||||||||||||   |||||| |||| ||| |||||||||||||||||    
T  26210262 tttttatcctccaaatcatc---ttcaatgatatgcttcaactctttgcattcttc 26210314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 26237506 - 26237558
Alignment:
Q  344 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 399  Q
    ||||||||||||||||||||   |||||| |||| ||| |||||||||||||||||    
T  26237506 tttttatcctccaaatcatc---ttcaatgatatgcttcaactctttgcattcttc 26237558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 11418814 - 11418747
Alignment:
Q  335 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattct 405  Q
    |||||||| ||||||| |||||| ||||||   ||||| |||| ||| ||||||||||||||||| |||||    
T  11418814 tttgaggaatttttattctccaagtcatct---tcaatcatatgcttcaactctttgcattcttcaattct 11418747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 27460800 - 27460864
Alignment:
Q  16 atatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgta 80  Q
    ||||| || |||||||||||||| ||||||  |||| | ||| |||| |||||||||||||||||    
T  27460800 atatgcaaatatttacagccaacatgtaatgattttcagaaagattggatagagtgtgtaccgta 27460864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 17639 - 17484
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||||||    
T  17639 ttggtagattttcaaatactacaaattttagatttggaatctccattttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctct 17540  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||| |  ||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  17539 tatcactagacactttagctcaggaagctctttacatatggagattggaaacacat 17484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 17740 - 17704
Alignment:
Q  120 gaagtctgctgttgatgctgaagccagggatagtttt 156  Q
    |||||||| |||||||||||||||||| |||||||||    
T  17740 gaagtctggtgttgatgctgaagccagagatagtttt 17704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 17798 - 17766
Alignment:
Q  53 aaaaatattgtatagagtgtgtaccgtagccaa 85  Q
    |||||||||| ||||||||||||||||||||||    
T  17798 aaaaatattggatagagtgtgtaccgtagccaa 17766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 174 - 315
Target Start/End: Original strand, 54687 - 54828
Alignment:
Q  174 tacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagc 273  Q
    ||||||||||||||||||||  |  ||||| |||||| |  |||||| ||||||||||||||||||||||| ||||||||||||||| |||  || ||||    
T  54687 tacaactttcagatttggaagattgactttctgatcaccttcttcacatacaaatatttcctctagctcatgtgcttctcttatgattagagcatctagc 54786  T
Q  274 tcaggaagctctttacatatggagattggaaagacatgttcc 315  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  54787 tcaggaagctctttacatatggagattggaaagacattttcc 54828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 429
Target Start/End: Original strand, 54907 - 54989
Alignment:
Q  344 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagaca 429  Q
    ||||||| |||||||||||||   ||||| |||| ||| ||||||||||||||||| ||||| || | ||| || |||||||||||    
T  54907 tttttattctccaaatcatct---tcaatcatatgcttcaactctttgcattcttcaattcttatatgaagcaactgaggtagaca 54989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 310
Target Start/End: Original strand, 8693277 - 8693432
Alignment:
Q  155 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 254  Q
    |||| ||||||||||||| ||||  ||  |||||||||||||| ||||| | ||||  |||||||||| |||||||||| || ||||||| |||||||||    
T  8693277 ttggaagattttcaaatactacatattctagatttggaatctcgactttctcatcacgaccttcacttgcaaatatttcatccagctcatctgcttctct 8693376  T
Q  255 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 310  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||    
T  8693377 tatgatcagaacatttagctcaggaagctcgttacatatggagactggaaagacat 8693432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 8693152 - 8693216
Alignment:
Q  16 atatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 81  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||    
T  8693152 atatgtaattatttacagccaacgtgtaatag-tttaaaaaatattggatagagtgtgtaccgtag 8693216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 434
Target Start/End: Original strand, 8693519 - 8693606
Alignment:
Q  344 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagacatctta 434  Q
    ||||||| |||||||||||||   |||||||||| ||| ||||||||||||||||| |||||||| | ||| || || |||||||| ||||    
T  8693519 tttttattctccaaatcatct---tcaataatatgcttcaactctttgcattcttcaattctcatataaagcaactgtggtagacacctta 8693606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University