View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15925_low_4 (Length: 648)

Name: NF15925_low_4
Description: NF15925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15925_low_4
NF15925_low_4
[»] chr2 (20 HSPs)
chr2 (275-634)||(44152998-44153350)
chr2 (21-284)||(44153967-44154237)
chr2 (383-481)||(9559665-9559763)
chr2 (383-480)||(13490856-13490953)
chr2 (385-479)||(37743710-37743804)
chr2 (387-467)||(31608182-31608262)
chr2 (384-463)||(7271068-7271147)
chr2 (394-481)||(13530548-13530635)
chr2 (383-481)||(14812279-14812377)
chr2 (386-463)||(7920211-7920288)
chr2 (400-473)||(31633478-31633551)
chr2 (386-446)||(2854399-2854459)
chr2 (383-481)||(37331801-37331899)
chr2 (383-481)||(39791547-39791645)
chr2 (400-481)||(42371946-42372027)
chr2 (383-481)||(16471133-16471228)
chr2 (395-481)||(2395064-2395150)
chr2 (394-444)||(34375279-34375329)
chr2 (403-468)||(17928278-17928343)
chr2 (383-419)||(9047666-9047702)
[»] chr1 (8 HSPs)
chr1 (383-452)||(3527718-3527787)
chr1 (395-481)||(4552183-4552269)
chr1 (394-481)||(38902174-38902260)
chr1 (415-473)||(16255672-16255730)
chr1 (384-446)||(4044865-4044927)
chr1 (398-457)||(45596035-45596094)
chr1 (402-479)||(52765517-52765594)
chr1 (403-471)||(41834776-41834844)
[»] chr4 (8 HSPs)
chr4 (398-481)||(33335278-33335361)
chr4 (384-481)||(45219014-45219111)
chr4 (383-481)||(34236742-34236840)
chr4 (383-446)||(29927321-29927384)
chr4 (385-451)||(32141378-32141444)
chr4 (383-481)||(43771855-43771952)
chr4 (403-464)||(22575379-22575440)
chr4 (384-444)||(49013820-49013880)
[»] chr8 (8 HSPs)
chr8 (383-481)||(13177759-13177857)
chr8 (383-481)||(42446572-42446670)
chr8 (403-480)||(41909217-41909294)
chr8 (384-457)||(2072196-2072269)
chr8 (387-446)||(10921706-10921765)
chr8 (403-509)||(6471195-6471300)
chr8 (400-461)||(515144-515205)
chr8 (421-481)||(45085576-45085636)
[»] chr5 (10 HSPs)
chr5 (403-461)||(3135624-3135682)
chr5 (348-428)||(565558-565639)
chr5 (383-433)||(16054423-16054473)
chr5 (395-446)||(39180396-39180447)
chr5 (395-441)||(25252423-25252469)
chr5 (395-441)||(25316208-25316254)
chr5 (395-481)||(34211229-34211315)
chr5 (393-481)||(8713804-8713891)
chr5 (400-460)||(13138528-13138588)
chr5 (401-461)||(39351049-39351109)
[»] chr3 (11 HSPs)
chr3 (404-480)||(50888879-50888955)
chr3 (384-481)||(26831815-26831912)
chr3 (403-470)||(15568516-15568583)
chr3 (386-446)||(44455107-44455167)
chr3 (383-462)||(26043409-26043488)
chr3 (383-446)||(27213975-27214038)
chr3 (393-457)||(44790837-44790897)
chr3 (403-481)||(15664495-15664573)
chr3 (400-481)||(4541311-4541392)
chr3 (384-477)||(30403230-30403323)
chr3 (405-481)||(29645590-29645666)
[»] chr7 (6 HSPs)
chr7 (383-481)||(7712500-7712598)
chr7 (384-481)||(1397838-1397935)
chr7 (391-451)||(41141230-41141290)
chr7 (394-446)||(25634750-25634802)
chr7 (383-446)||(24316274-24316337)
chr7 (395-481)||(27219872-27219957)
[»] chr6 (2 HSPs)
chr6 (383-481)||(7984584-7984682)
chr6 (399-477)||(15064577-15064654)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 275 - 634
Target Start/End: Complemental strand, 44153350 - 44152998
Alignment:
Q  275 cttgttagaatgttgaagtggatcttgtatgtacatttacatatacaccttatttataatttgagtctgagactaacaaatgacttaaggacattattaa 374  Q
    ||||||| |||||||||||||||||||||||||||| ||||      ||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  44153350 cttgttaaaatgttgaagtggatcttgtatgtacatgtaca------ccttatttataatttgagtctgag--taacaaatgacttaagaacattattaa 44153259  T
Q  375 aatacgtccaaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattattttt-ggat 473  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| ||||||||| ||||||| ||||    
T  44153258 aatacgcccaaaaagaaattttgttttgaaaatacaagccaaacatatataaaaattct-actacacaatttataatgtaaaaattactattttttggat 44153160  T
Q  474 gcttaaactttactctatcgaatacttgttagcattctccttataatttttattgttattacataataaaaactcaatattaactaggtatataatatat 573  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44153159 gcttaaacaatactctatcgaatacttattagcattctccttataatttttattgttattacataataaacactcaatattaactaggtatataatatat 44153060  T
Q  574 agtttt-attatgcaatgaagtgacctgattttgcaatgaaattatacaactagtacatctt 634  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44153059 agttttaattatgcaatgaagtgacctgatttagcaatgaaattatacaactagtacatctt 44152998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 44154237 - 44153967
Alignment:
Q  21 tatgggtgggtgaggtgtgcgagtgtaaatggtaagcc-atgttgaccataccaaacatgacacgtagtatatgttaaataccggcttcgattcttccac 119  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44154237 tatgggtgggtgaggtgtgcgagtgtaaatggtaagcccatgttgaccataccaaacatgacacgtagtatatgttaaataccggcttcgattcttccac 44154138  T
Q  120 gtgtgtgtgtgcgcgtctattatatgactgaacggacataatcattctcat----------tgtgttctagtagtttggtccctctctaacttttgcagc 209  Q
    ||||||||    |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  44154137 gtgtgtgt----gcgtctattatatgactgaacggacataatcattctcatttcatcctcgtgtgttctagtagtttggtccctctctaacttttgcagc 44154042  T
Q  210 ctcgtttttataatgtattttatttaagatcaacattttagtacactaaactcataatttgagttcttgttagaa 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44154041 ctcgtttttataatgtattttatttaagatcaacattttagtacactaaactcataatttgagttcttgttagaa 44153967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 9559665 - 9559763
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||||| || |||||||||||||||||||||||||||  | ||||||| || ||||||||||||  ||| ||||| ||| |||||||| ||||||||||    
T  9559665 caaaaataaattttgttttgaaaatacaagtcaaacacgtgtaaaaattataactacacaatttccaatgtaaaagttaatatttttgaatgcttaaac 9559763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 383 - 480
Target Start/End: Original strand, 13490856 - 13490953
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaa 480  Q
    |||||| || |||||| ||||||||| ||| |||||| || |||||||||| |||| |||||||  ||||||||||||| |||||||| |||||||||    
T  13490856 caaaaataaattttgtcttgaaaatataaggcaaacacatgtaaaaatcataactatacaattttcaatataaaaattactatttttgaatgcttaaa 13490953  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 385 - 479
Target Start/End: Complemental strand, 37743804 - 37743710
Alignment:
Q  385 aaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaa 479  Q
    ||||||| |||||||| |||||||||||| |||||||||||||| | || ||| |||||||| |||| ||||| |||||| ||||  ||||||||    
T  37743804 aaaagaaattttgtttcgaaaatacaagttaaacatatataaaagttataactgcacaatttttaatgtaaaagttattacttttaaatgcttaa 37743710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 31608182 - 31608262
Alignment:
Q  387 aagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattattt 467  Q
    ||||| |||||| |||||||| |||| | |||| ||||||||||||| |||| ||||||| |||||||||||||| |||||    
T  31608182 aagaaattttgtcttgaaaatgcaagactaacacatataaaaatcataactatacaatttttaatataaaaattactattt 31608262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 463
Target Start/End: Complemental strand, 7271147 - 7271068
Alignment:
Q  384 aaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattatt 463  Q
    |||||||| |||| |||||||||||||||| |||||||||||||| |||| | ||||||||||  ||| ||||| |||||    
T  7271147 aaaaagaaattttattttgaaaatacaagttaaacatatataaaattcataattacacaatttccaatgtaaaagttatt 7271068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 13530635 - 13530548
Alignment:
Q  394 tttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||| |||||||||||||||||||||||||| || |||| | ||||||||||  ||  |||||| || || ||||||||||||||||    
T  13530635 tttgtcttgaaaatacaagtcaaacatatatacaagtcataattacacaattttcaaagtaaaaactactaattttggatgcttaaac 13530548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 481
Target Start/End: Complemental strand, 14812377 - 14812279
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||||||| |||| | ||||||||||||||||||||||| ||||| | || | ||||||||||  ||| ||||| ||| || ||||| ||||||||||    
T  14812377 caaaaagaaattttatcttgaaaatacaagtcaaacatatgtaaaagttataattacacaattttcaatgtaaaagttaatacttttgaatgcttaaac 14812279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 463
Target Start/End: Original strand, 7920211 - 7920288
Alignment:
Q  386 aaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattatt 463  Q
    ||||||| ||||| |||||||||||| ||||||| || |||||||||| ||||||||||||  ||| || ||||||||    
T  7920211 aaagaaggtttgtcttgaaaatacaaatcaaacacatgtaaaaatcataactacacaattttcaatgtagaaattatt 7920288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 31633551 - 31633478
Alignment:
Q  400 ttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggat 473  Q
    ||||||||||||||||||||||| |||||  ||| ||||||||||||  ||| ||||||||| || ||||||||    
T  31633551 ttgaaaatacaagtcaaacatatgtaaaaggcataactacacaatttccaatgtaaaaattactaattttggat 31633478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 2854459 - 2854399
Alignment:
Q  386 aaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaattt 446  Q
    |||||| |||||| |||||||||||||| |||||||| ||||| |||| ||||||||||||    
T  2854459 aaagaaattttgtcttgaaaatacaagttaaacatatctaaaagtcataactacacaattt 2854399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 37331801 - 37331899
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||||||| |||| | || |||||| |||||||| |||||| |||||||| | |||||||||   |||| |||||||| || |||| |||||||||||    
T  37331801 caaaaagaaattttatcttaaaaatataagtcaaatatatattaaaatcataattacacaattgtcaatacaaaaattactacttttagatgcttaaac 37331899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 39791547 - 39791645
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||||||| || ||||||||||||||||||||||||| | | ||| ||||||    ||||||| |||||||||||||  || ||||  ||||||||||    
T  39791547 caaaaagaaattatgttttgaaaatacaagtcaaacatttgttaaagtcattatcgtacaatttctaatataaaaattgctacttttatatgcttaaac 39791645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 481
Target Start/End: Original strand, 42371946 - 42372027
Alignment:
Q  400 ttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||||||| |||| |||||||| || |  | || |||||||||||| ||||||||||||||  ||||||| ||||||||||    
T  42371946 ttgaaaatataagttaaacatatgtagatgttataactacacaatttttaatataaaaattacaatttttgaatgcttaaac 42372027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 481
Target Start/End: Complemental strand, 16471228 - 16471133
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||||||| |||| | |||||||||||||| ||    |||||||| || | |||||||| ||| || ||||||| |||||| ||||||||||||||||    
T  16471228 caaaaagaaattttatgttgaaaatacaagttaac---atataaaagtcttaactacacagtttttattataaaagttattacttttggatgcttaaac 16471133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 2395064 - 2395150
Alignment:
Q  395 ttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||| |||||||||||||||||  | |||||||| |||| |||||||||||| |||| | ||| ||| |  ||||||||| ||||||    
T  2395064 ttgtcttgaaaatacaagtcaagtacatataaaagtcataactacacaatttctaatgtgaaatttactgcttttggatgtttaaac 2395150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 444
Target Start/End: Original strand, 34375279 - 34375329
Alignment:
Q  394 tttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaat 444  Q
    ||||| ||||||||||||||||||||||||||||  |||| | ||||||||    
T  34375279 tttgtcttgaaaatacaagtcaaacatatataaatgtcataattacacaat 34375329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 468
Target Start/End: Original strand, 17928278 - 17928343
Alignment:
Q  403 aaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttt 468  Q
    ||||||||||| |||||| || ||||| ||| | | |||||||||| |||||||||||| ||||||    
T  17928278 aaaatacaagttaaacatgtaaaaaaaacataatttcacaatttattatataaaaattaatatttt 17928343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 9047702 - 9047666
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaaca 419  Q
    ||||||||| || ||||||||||||||||||||||||    
T  9047702 caaaaagaaattatgttttgaaaatacaagtcaaaca 9047666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 383 - 452
Target Start/End: Complemental strand, 3527787 - 3527718
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataata 452  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||| |||| |||||||||||| |||||    
T  3527787 caaaaagaaattttgttatggaaatacaagtcaaacatatataaaagtcataactacacaatttctaata 3527718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 4552183 - 4552269
Alignment:
Q  395 ttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||||||||||||||||||||||| ||||||||  ||| ||||||||||||  ||  ||| ||||| ||||||| |||||||||||    
T  4552183 ttgttttgaaaatacaagtcaaacaaatataaaagacataactacacaattttcaacgtaataattactatttttagatgcttaaac 4552269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 38902260 - 38902174
Alignment:
Q  394 tttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||| |||||||| |||||||||||||||||||| |||| | ||||||||||  ||| | |||| |||||||||| |||||||||||    
T  38902260 tttgtcttgaaaattcaagtcaaacatatataaaagtcataattacacaattttcaatgt-aaaagtattatttttagatgcttaaac 38902174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 473
Target Start/End: Original strand, 16255672 - 16255730
Alignment:
Q  415 aaacatatataaaaatcattactacacaatttataatataaaaattattatttttggat 473  Q
    |||||||| ||||| |||||||||||||||||||||| ||||| |||||| ||||||||    
T  16255672 aaacatatttaaaattcattactacacaatttataatgtaaaagttattacttttggat 16255730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 4044865 - 4044927
Alignment:
Q  384 aaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaattt 446  Q
    ||||||||  ||||| |||||||||||||||||||||||||| || |||| |||| |||||||    
T  4044865 aaaaagaaagtttgtcttgaaaatacaagtcaaacatatatacaagtcataactatacaattt 4044927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 457
Target Start/End: Original strand, 45596035 - 45596094
Alignment:
Q  398 ttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaa 457  Q
    |||||||||||||||| ||| |||| ||||| | || |||||||||||| ||||||||||    
T  45596035 ttttgaaaatacaagtgaaatatatgtaaaagttataactacacaatttttaatataaaa 45596094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 52765517 - 52765594
Alignment:
Q  402 gaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaa 479  Q
    ||||||| ||||||||||||| ||||  |||| |||||||||||  |||| | ||||||| || |||| |||||||||    
T  52765517 gaaaatataagtcaaacatatgtaaacgtcataactacacaattgttaatgttaaaattactacttttagatgcttaa 52765594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 471
Target Start/End: Complemental strand, 41834844 - 41834776
Alignment:
Q  403 aaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttgg 471  Q
    |||||||||||||||||||||||||| | || | ||||||||||  ||  ||||||||| || ||||||    
T  41834844 aaaatacaagtcaaacatatataaaagtaataattacacaattttcaacgtaaaaattactagttttgg 41834776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 481
Target Start/End: Original strand, 33335278 - 33335361
Alignment:
Q  398 ttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||| ||||||||||||||| | || |||| ||||| ||||||||||||  ||||||||||||| || ||||||||||||||||    
T  33335278 ttttaaaaatacaagtcaaatacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaac 33335361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 45219014 - 45219111
Alignment:
Q  384 aaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||||||| |||||| || |||||| |||| |||||||| ||||| |||| | ||||||||||  ||||||||||||| || |||| |||||||||||    
T  45219014 aaaaagaaattttgtctttaaaatataagtaaaacatatgtaaaagtcataagtacacaatttcaaatataaaaattactacttttagatgcttaaac 45219111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 34236742 - 34236840
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||||||| |||||| || ||||||||| ||||| | || |||||||||| ||||||||||||  ||| ||||||| || | || |||||||||||||    
T  34236742 caaaaagaaattttgtcttaaaaatacaattcaaaaacatgtaaaaatcataactacacaatttgcaatgtaaaaatcatcacttatggatgcttaaac 34236840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 29927321 - 29927384
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaattt 446  Q
    |||||||||  ||||| ||| |||||||||||||||| |||||||| |||| |||| |||||||    
T  29927321 caaaaagaaactttgtcttggaaatacaagtcaaacacatataaaagtcataactatacaattt 29927384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 385 - 451
Target Start/End: Original strand, 32141378 - 32141444
Alignment:
Q  385 aaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataat 451  Q
    ||||||| |||| | |||||||||||||||||||| || |||||||||  |||| ||||||| ||||    
T  32141378 aaaagaaattttatcttgaaaatacaagtcaaacacatctaaaaatcacaactatacaatttttaat 32141444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 43771855 - 43771952
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||||||||  ||||| || ||||||||||||||||| || | ||| |||| ||| ||||| ||| ||| ||||||||| || ||||| ||||||||||    
T  43771855 caaaaagaaactttgtcttaaaaatacaagtcaaacacatgttaaagtcataactgcacaa-ttacaatgtaaaaattactacttttgaatgcttaaac 43771952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 22575379 - 22575440
Alignment:
Q  403 aaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattatta 464  Q
    ||||||||||||||||| || ||||| |||| | |||| |||||  ||||||||||||||||    
T  22575379 aaaatacaagtcaaacacatgtaaaagtcataattacataattttcaatataaaaattatta 22575440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 49013820 - 49013880
Alignment:
Q  384 aaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaat 444  Q
    ||||| || |||||| ||||||||| |||| ||| | ||||||||||||| ||||||||||    
T  49013820 aaaaataaattttgtcttgaaaatataagttaaatacatataaaaatcataactacacaat 49013880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 383 - 481
Target Start/End: Complemental strand, 13177857 - 13177759
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||||||||  ||||| |||||||||||||||||||| || ||||| |||| |||||| |||||  ||||||||| ||| || ||||| ||||||||||    
T  13177857 caaaaagaaagtttgtcttgaaaatacaagtcaaacacatgtaaaagtcataactacataatttccaatataaaagttactacttttgaatgcttaaac 13177759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 42446572 - 42446670
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||||||| ||||||||| |||||| |||| ||| |||| ||||| | || ||||||||||||  |||||||||||||  ||||||||||| ||||||    
T  42446572 caaaaagaaattttgttttaaaaatataagttaaatatatgtaaaagttataactacacaattttcaatataaaaattacaatttttggatgtttaaac 42446670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 480
Target Start/End: Original strand, 41909217 - 41909294
Alignment:
Q  403 aaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaa 480  Q
    ||||||||||| |||||||| ||||| |||| |||| ||||||| |||| ||||||| ||||| ||||||||||||||    
T  41909217 aaaatacaagttaaacatatctaaaagtcataactatacaatttttaatgtaaaaatgattatctttggatgcttaaa 41909294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 384 - 457
Target Start/End: Complemental strand, 2072269 - 2072196
Alignment:
Q  384 aaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaa 457  Q
    |||||||| |||| | |||||||||||| ||||||| |||||||| | || |||||||||||| ||||||||||    
T  2072269 aaaaagaaattttctcttgaaaatacaaatcaaacacatataaaagttataactacacaatttttaatataaaa 2072196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 10921706 - 10921765
Alignment:
Q  387 aagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaattt 446  Q
    ||||| ||||||  ||||||||||||||||||| || |||||||||| ||||||||||||    
T  10921706 aagaatttttgtcctgaaaatacaagtcaaacacatgtaaaaatcataactacacaattt 10921765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 509
Target Start/End: Original strand, 6471195 - 6471300
Alignment:
Q  403 aaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaactttactctatcgaatacttgt 502  Q
    |||||||||||||||||||||||||| | || | || |||||||  || ||||||| || || |||||||| |||||||  |||||||  | ||||||||    
T  6471195 aaaatacaagtcaaacatatataaaagtaataattatacaatttccaagataaaaactactaattttggatacttaaacaatactcta-gggatacttgt 6471293  T
Q  503 tagcatt 509  Q
    |||||||    
T  6471294 tagcatt 6471300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 461
Target Start/End: Complemental strand, 515205 - 515144
Alignment:
Q  400 ttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaatta 461  Q
    |||||||||||||||||| |||| ||||| |||| ||||||||||||  ||| |||||||||    
T  515205 ttgaaaatacaagtcaaatatatgtaaaagtcataactacacaatttccaatttaaaaatta 515144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 481
Target Start/End: Original strand, 45085576 - 45085636
Alignment:
Q  421 atataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||||| |||||  ||||  ||||| |||| |||||||||||| ||||||||||||||||    
T  45085576 atataaatatcatatctacgtaatttttaatgtaaaaattattacttttggatgcttaaac 45085636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 3135682 - 3135624
Alignment:
Q  403 aaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaatta 461  Q
    |||||||||||||||||||||||||| |||| |||||||||||| |||| |||||||||    
T  3135682 aaaatacaagtcaaacatatataaaagtcataactacacaatttttaatgtaaaaatta 3135624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 565639 - 565558
Alignment:
Q  348 taacaaatgacttaaggacattatt-aaaatacgtccaaaaagaagttttgttttgaaaatacaagtcaaacatatataaaa 428  Q
    ||||||||| ||||||| ||||||| |||| || | ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  565639 taacaaatgtcttaagggcattatttaaaaaacctacaaaaagaatttttgtcttgaaaatacaagtcaaacacatataaaa 565558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 433
Target Start/End: Complemental strand, 16054473 - 16054423
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcat 433  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||| ||||    
T  16054473 caaaaagaaattttgtttttaaaatacaagtcaaacacatataaaagtcat 16054423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 446
Target Start/End: Original strand, 39180396 - 39180447
Alignment:
Q  395 ttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaattt 446  Q
    |||| ||||||||||||||||||||||||||||| | || | ||||||||||    
T  39180396 ttgtcttgaaaatacaagtcaaacatatataaaagttataattacacaattt 39180447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 25252423 - 25252469
Alignment:
Q  395 ttgttttgaaaatacaagtcaaacatatataaaaatcattactacac 441  Q
    |||| |||||||||||||||||||| || |||||||||| |||||||    
T  25252423 ttgtcttgaaaatacaagtcaaacacatgtaaaaatcataactacac 25252469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 25316208 - 25316254
Alignment:
Q  395 ttgttttgaaaatacaagtcaaacatatataaaaatcattactacac 441  Q
    |||| |||||||||||||||||||| || |||||||||| |||||||    
T  25316208 ttgtcttgaaaatacaagtcaaacacatgtaaaaatcataactacac 25316254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 481
Target Start/End: Complemental strand, 34211315 - 34211229
Alignment:
Q  395 ttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||| |||||||  ||||| ||| | |||||||| |||| ||||||||||||  ||| |||||||||  ||||||||||| ||||||    
T  34211315 ttgtcttgaaaaagcaagttaaatacatataaaagtcataactacacaattttcaatgtaaaaattacaatttttggatgtttaaac 34211229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 481
Target Start/End: Original strand, 8713804 - 8713891
Alignment:
Q  393 ttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||||| ||||||||||||||||||||||| |  || |||| ||| |||||||| ||||| |||| || ||| ||||  ||||||||||    
T  8713804 ttttgtcttgaaaatacaagtcaaacatat-tttaagtcataactgcacaatttctaatacaaaagttgttacttttaaatgcttaaac 8713891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 460
Target Start/End: Complemental strand, 13138588 - 13138528
Alignment:
Q  400 ttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaatt 460  Q
    |||||||||||||||||||| |||||||| |||| | |||| |||||  ||| ||||||||    
T  13138588 ttgaaaatacaagtcaaacacatataaaagtcataattacataatttccaatgtaaaaatt 13138528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 39351109 - 39351049
Alignment:
Q  401 tgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaatta 461  Q
    ||||||||||||||||||| || ||||| |||| | || ||||||| |||| |||||||||    
T  39351109 tgaaaatacaagtcaaacacatctaaaagtcataattatacaatttctaatgtaaaaatta 39351049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 404 - 480
Target Start/End: Original strand, 50888879 - 50888955
Alignment:
Q  404 aaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaa 480  Q
    |||||||||||||||| || ||||| | || |||||||||||| |||||||||||||||| |||||  |||||||||    
T  50888879 aaatacaagtcaaacacatgtaaaagttataactacacaatttttaatataaaaattattgtttttaaatgcttaaa 50888955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 26831815 - 26831912
Alignment:
Q  384 aaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||||||| |||| |||| |||||| |||||||||  ||||||||||||    ||||||||||||||| ||||||||| || ||||  ||||||||||    
T  26831815 aaaaagaaattttatttttaaaatataagtcaaactcatataaaaatcacatttacacaatttataatgtaaaaattactacttttaaatgcttaaac 26831912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 403 - 470
Target Start/End: Original strand, 15568516 - 15568583
Alignment:
Q  403 aaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttg 470  Q
    ||||| ||||||||||| ||||||||| ||| |||| ||||||| |||||||||| |||||| |||||    
T  15568516 aaaatgcaagtcaaacacatataaaaagcataactatacaatttttaatataaaagttattacttttg 15568583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 44455107 - 44455167
Alignment:
Q  386 aaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaattt 446  Q
    |||||| |||||| |||||||||||||||||||| | |||||| |||| |||| |||||||    
T  44455107 aaagaaattttgtcttgaaaatacaagtcaaacacacataaaagtcataactatacaattt 44455167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 462
Target Start/End: Complemental strand, 26043488 - 26043409
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattat 462  Q
    |||||||| ||||||| ||||||||| |||| ||||| || |||||  ||| ||||||||||||  ||| ||||||||||    
T  26043488 caaaaagaggttttgtcttgaaaatataagttaaacacatgtaaaagacatgactacacaattttcaatgtaaaaattat 26043409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 27214038 - 27213975
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaattt 446  Q
    |||||||||  ||||| || |||||||||||||||||||| ||||| |||| |||| |||||||    
T  27214038 caaaaagaaactttgtcttaaaaatacaagtcaaacatatgtaaaagtcataactatacaattt 27213975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 457
Target Start/End: Original strand, 44790837 - 44790897
Alignment:
Q  393 ttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaa 457  Q
    |||||||||||||||||| ||||||    |||||||||||| | |||||||||| ||||||||||    
T  44790837 ttttgttttgaaaatacatgtcaaa----tataaaaatcataaatacacaatttttaatataaaa 44790897  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 15664495 - 15664573
Alignment:
Q  403 aaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||||||||| ||||| || |||||||||| |||| | || || |||||||||| |||||| ||||| ||| ||||||    
T  15664495 aaaatacaagttaaacacatgtaaaaatcataactatataacttttaatataaaagttattacttttgaatgtttaaac 15664573  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 481
Target Start/End: Complemental strand, 4541392 - 4541311
Alignment:
Q  400 ttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||||||||||||||||| |||| ||||| | || | |||| ||||   ||||||||||||| || |||||||| |||||||    
T  4541392 ttgaaaatacaagtcaaagatatgtaaaagttataattacaaaattctcaatataaaaattactaattttggatccttaaac 4541311  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 477
Target Start/End: Complemental strand, 30403323 - 30403230
Alignment:
Q  384 aaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgctt 477  Q
    ||||||||  ||||| |||||| ||||||| | ||| || ||||| |||| | || ||||||| |||| ||||| |||||| ||||||||||||    
T  30403323 aaaaagaaaatttgtcttgaaactacaagttagacacatgtaaaagtcataattatacaatttctaatgtaaaagttattacttttggatgctt 30403230  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 29645590 - 29645666
Alignment:
Q  405 aatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    ||||||||||||||| || ||||||| || |||| |||| || |||| ||||| ||| ||||||| |||||| ||||    
T  29645590 aatacaagtcaaacacatgtaaaaattataactatacaaattttaatgtaaaagttactatttttagatgctcaaac 29645666  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 7712500 - 7712598
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||||||||  |||||||||||||||||||||||||| |||||||| | || | |||||||||| |||  |||||| |  || |||| |||||||||||    
T  7712500 caaaaagaaagtttgttttgaaaatacaagtcaaacaaatataaaagtgataattacacaatttctaaggtaaaaacttctaattttagatgcttaaac 7712598  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 1397838 - 1397935
Alignment:
Q  384 aaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||||||| |||| | ||| || ||||| ||||||  || |||||||||| |||||||||||| |||||||||||||| || ||||  ||||||||||    
T  1397838 aaaaagaaattttatcttggaactacaaatcaaacgcatttaaaaatcataactacacaatttttaatataaaaattactacttttaaatgcttaaac 1397935  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 41141230 - 41141290
Alignment:
Q  391 agttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataat 451  Q
    |||||| | |||||||||||||| ||||| ||||||||||||  |||||||||||||||||    
T  41141230 agttttatcttgaaaatacaagtgaaacacatataaaaatcacaactacacaatttataat 41141290  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 25634802 - 25634750
Alignment:
Q  394 tttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaattt 446  Q
    |||||| | |||||||||||||||||||| ||||||| || ||||||||||||    
T  25634802 tttgttctaaaaatacaagtcaaacatatgtaaaaatgataactacacaattt 25634750  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 24316274 - 24316337
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaattt 446  Q
    |||||||||  |||||||||||||||||||||||| || ||||||| | || | ||||||||||    
T  24316274 caaaaagaaagtttgttttgaaaatacaagtcaaatatgtataaaagttataattacacaattt 24316337  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 27219872 - 27219957
Alignment:
Q  395 ttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattatta-tttttggatgcttaaac 481  Q
    |||| |||||||||||| | ||||| |||  |||||||| |||||||||||| |||| ||||||||| || |||||| ||| ||||||    
T  27219872 ttgtcttgaaaatacaaattaaacacata--aaaatcataactacacaatttttaatgtaaaaattactactttttgaatgtttaaac 27219957  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 7984584 - 7984682
Alignment:
Q  383 caaaaagaagttttgttttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgcttaaac 481  Q
    |||||||||  ||||| |||||||||||||||||||| || ||||| |||| |||||| |||||  ||| ||||| ||  || ||||||||||||||||    
T  7984584 caaaaagaaactttgtcttgaaaatacaagtcaaacacatgtaaaagtcataactacaaaattttcaatgtaaaatttgctacttttggatgcttaaac 7984682  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 477
Target Start/End: Original strand, 15064577 - 15064654
Alignment:
Q  399 tttgaaaatacaagtcaaacatatataaaaatcattactacacaatttataatataaaaattattatttttggatgctt 477  Q
    |||||||||||||||||||||||| | |||||||| | ||||||||||  ||||||||| ||| || |||| |||||||    
T  15064577 tttgaaaatacaagtcaaacatatgt-aaaatcataaatacacaattttcaatataaaagttactacttttagatgctt 15064654  T

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