View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15925_low_5 (Length: 526)
Name: NF15925_low_5
Description: NF15925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15925_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 167 - 514
Target Start/End: Complemental strand, 14233512 - 14233162
Alignment:
| Q |
167 |
aggttcacaagacatattgtaaatcaacaaacatgacgtaatttcacatgctattaagtgtatcttgtcatcacatgcttgcaaaattttcacaattact |
266 |
Q |
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| T |
14233512 |
aggttcacaagacatattgtaaatcgacaaacatgacataatttcacatgctattaagtgtagcttgtcatcacgtgcttgcaaaattttcacaattact |
14233413 |
T |
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| Q |
267 |
ttcaatcattaacattcatagaacaaaaactgtcataat---atgaagtacagcttcatgttcatgcatttaatgaaaggataagcaaagagagattgct |
363 |
Q |
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| T |
14233412 |
ttcaatcattaacattcatagaacaaaaactgtcataatgatatgaagtacagcttcatgttcatgcatttaatgaaaggataagcaaagagagattgct |
14233313 |
T |
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| Q |
364 |
tcctaaattacaaaatacgactagatataatttccggtcatcaattcctagtctttccggacatcaattaatctaaatataatttctagttgaagaacgg |
463 |
Q |
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| T |
14233312 |
tcctaaatcacaaaatacgactagatataatttccggtcattaattcctagtctttccggacatcaattagtctaaatataatttctagtcgaagaacgg |
14233213 |
T |
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| Q |
464 |
acatcgattccttcttgtcattgttctttccaaatcctaccagtaaccctt |
514 |
Q |
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| T |
14233212 |
acatcaattccttcttgtcattgttctttccaaatcctaccagtaaccctt |
14233162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 14233859 - 14233755
Alignment:
| Q |
1 |
atgccttatacagctgatatatagatattcttataattatggtgttacaacttttccaatacattatcatcttacccgttatttcttcaatgatctatta |
100 |
Q |
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| T |
14233859 |
atgccttatac-gctgatatatagatattcgtataattatggtgttacaacttttccagtgcattataattttacccgttattttttcaatgatctatta |
14233761 |
T |
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| Q |
101 |
gttatt |
106 |
Q |
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| T |
14233760 |
gttatt |
14233755 |
T |
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