View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15925_low_7 (Length: 455)
Name: NF15925_low_7
Description: NF15925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15925_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 13271207 - 13271024
Alignment:
| Q |
17 |
atgtgttgagagagaaatagtgctaactaagagagagcttatttcatgcttgcttcacgcaaacacctaactattgaggttaagcctttgcttcaactcg |
116 |
Q |
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| T |
13271207 |
atgtgttgagagagaaatagtgctaactaagagagagcttatttcatgcttgcttcacgcaaacacctaactattgaggttaagcctttgcttcaactcg |
13271108 |
T |
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| Q |
117 |
tggctttaaagttttcttctaaccatttttaaatccttcattaagatatattaatctcaccaaacccttatatttatagaatca |
200 |
Q |
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| T |
13271107 |
tggctttaaagttttcttctaaccatttttaaatccttcattaagatatattaatctcaccaaacccttatatttatagaatca |
13271024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 260 - 443
Target Start/End: Complemental strand, 13270964 - 13270777
Alignment:
| Q |
260 |
aatgctatgaatcccataaaccctactttcttaacctaggtaataattacatgcccttctcataaaaatttatattatcattcttgccctagctagttta |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
13270964 |
aatgctatgaatcccataaaccctactttcttaacctaggtaataataacatgcccttctcataaaaatttatactatcattcttgccctagctagttaa |
13270865 |
T |
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| Q |
360 |
tcataaagaagg----nnnnnnnnngagtgctaggtacaacaannnnnnnaagatgagtataaactcaggttgtagcggtagtggttg |
443 |
Q |
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| T |
13270864 |
tcataaagaaggaaaaaaaaaaaaagagtgctaggtacaacaacttttttaagatgagtataaactcaggttgtagtggtagtggttg |
13270777 |
T |
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