View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15925_low_8 (Length: 454)

Name: NF15925_low_8
Description: NF15925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15925_low_8
NF15925_low_8
[»] chr1 (10 HSPs)
chr1 (57-368)||(1794134-1794448)
chr1 (362-436)||(1794508-1794582)
chr1 (18-284)||(2021026-2021293)
chr1 (36-131)||(3374130-3374225)
chr1 (20-129)||(6599646-6599755)
chr1 (59-259)||(2007930-2008130)
chr1 (35-199)||(3342695-3342859)
chr1 (20-131)||(4333561-4333672)
chr1 (59-129)||(3364053-3364123)
chr1 (36-131)||(3380256-3380351)
[»] chr2 (3 HSPs)
chr2 (20-131)||(20936137-20936248)
chr2 (17-131)||(20954375-20954489)
chr2 (59-103)||(20924566-20924610)
[»] chr5 (1 HSPs)
chr5 (59-129)||(17971163-17971233)
[»] chr4 (2 HSPs)
chr4 (59-128)||(21238956-21239025)
chr4 (170-238)||(21239067-21239135)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 57 - 368
Target Start/End: Original strand, 1794134 - 1794448
Alignment:
Q  57 atatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtttcacacgtcggatcagaggtggtgt 156  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1794134 atatctgaattagattttatcagatttctacttctatattctcctgtcctagaacatatgactgtgaagcctgtttcatacgtcggatcagaggtggtgt 1794233  T
Q  157 taaaattattgcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttattcaactcttaaatgcatat 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1794234 taaaattattgcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcgtcataatgttttttattcaactcttaaatgcatat 1794333  T
Q  257 taccatttgtctcttt---ttaatgaaccaagaatcaagaatgctcacctttcatgacttcagttgtttttctatagacaaatgttactttggttattct 353  Q
    ||||||||||||||||   |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1794334 taccatttgtctctttatattaatgaaccaagaataaagaatggtcacctttcatgacttcagttgtttttctatagacaaatgttactttggttattct 1794433  T
Q  354 acaatgtatatgaat 368  Q
    ||||||||| |||||    
T  1794434 acaatgtatgtgaat 1794448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 362 - 436
Target Start/End: Original strand, 1794508 - 1794582
Alignment:
Q  362 tatgaatttctattgtgttgtttacaagaaaagtatggaaacatataatagattttgtgaatgtttctaaattcg 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  1794508 tatgaatttctattgtgttgtttacaagaaaagtatggaaacatataatagattcattgaatgtttctaaattcg 1794582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 2021026 - 2021293
Alignment:
Q  18 caagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatga 117  Q
    |||||| ||| |||||| || || ||||||| |||||  | | |||||||||||||| | || ||| ||||||| ||||| ||| | |||||| | |||     
T  2021026 caagtgtgacatgtgtgtattgaaggcatctctggtatgaaagctgaattagattttttgagatttctacttctctattcgcctatgctagaaaagatgg 2021125  T
Q  118 ctgtgaagcctgtttcacacgtcggatcagaggtggtgttaaaattattgcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagt 217  Q
      |||||||||| ||   ||||||||||  || || ||| | || |  |||  |||||||| ||||| | ||||||||||||  ||||   || ||||||    
T  2021126 aagtgaagcctgatttgaacgtcggatctaagttgatgtcagaactgctgcgattcaagagagcctccgcacaagctgaagttgtttaccttggggaagt 2021225  T
Q  218 ctcttcataatgttttttattcaactcttaaatgcatattacca-tttgtctctttttaatgaaccaa 284  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||| ||||| ||||||| |||| ||||    
T  2021226 ctcttcatgatgttttttattcaactcttaaatgtatattgccattttgtttctttttcatgatccaa 2021293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 3374130 - 3374225
Alignment:
Q  36 atagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 131  Q
    ||||||||||||| |||||  | ||| ||||||||||||||  ||||| |||||| |||||||||||| |||||| | |||| |||||||| ||||    
T  3374130 atagatggcatctctggtatcagatcagaattagattttattcggtttctacttcgatattctcctgtgctagaaaagatgattgtgaagcatgtt 3374225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 6599755 - 6599646
Alignment:
Q  20 agtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgact 119  Q
    |||||||| |||| | ||||||||||||| |||||  | | |||| ||||| || ||||| ||| ||||||||||||||||||| ||||||   ||||||    
T  6599755 agtgcgacatgtgagaatagatggcatctctggtatcaaacctgagttagacttcatcagctttatacttctatattctcctgtgctagaaaggatgact 6599656  T
Q  120 gtgaagcctg 129  Q
    ||||| ||||    
T  6599655 gtgaaacctg 6599646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 2007930 - 2008130
Alignment:
Q  59 atctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtttcacacgtcggatcagaggtggtgtta 158  Q
    |||||||||||||||||| || ||| |||||||  |||| ||||| |||||| | ||||  ||||||||   ||   |||| |||||  || || ||| |    
T  2007930 atctgaattagattttatgagatttctacttctccattcgcctgtgctagaaaagatgagagtgaagcccaattttaacgttggatcgaagttgatgtca 2008029  T
Q  159 aaattattgcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttattcaactcttaaatgcatatta 258  Q
     |||| ||||  |||||||| ||||||| ||||||||||||  ||||   || |||||||| ||  | || |||||||||||||||||||||| ||||||    
T  2008030 gaattgttgcgattcaagagagcctcagcacaagctgaagttgtttaccttggggaagtctattggtgatattttttattcaactcttaaatgtatatta 2008129  T
Q  259 c 259  Q
    |    
T  2008130 c 2008130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 3342695 - 3342859
Alignment:
Q  35 gatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtttca 134  Q
    |||||||||||||| |||||  | |||||||||||||||||||   ||| ||||||||||||||||||  |||||| | |||   ||||||||| || ||    
T  3342695 gatagatggcatctctggtaccaaatctgaattagattttatccaatttctacttctatattctcctgatctagaaaagatgttcgtgaagcctattgca 3342794  T
Q  135 cacgtcggatcagaggtggtgttaaaattattgcagttcaagagggcctcaggacaagctgaagt 199  Q
     ||||| || | |||||  ||  |||| || | | ||||||||| || ||| |||||||||||||    
T  3342795 aacgtcagaactgaggtaatgacaaaactaattcggttcaagagagcatcaagacaagctgaagt 3342859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 4333672 - 4333561
Alignment:
Q  20 agtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgact 119  Q
    |||||||| ||||  |||||||||||||| |||||     ||||||||| |||| ||||| ||| |||||||||||||||  || |||||| | |||| |    
T  4333672 agtgcgacatgtgacgatagatggcatctctggtacccagtctgaattaaatttgatcagatttctacttctatattctctggtgctagaaaagatgatt 4333573  T
Q  120 gtgaagcctgtt 131  Q
    ||||||||||||    
T  4333572 gtgaagcctgtt 4333561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 3364053 - 3364123
Alignment:
Q  59 atctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctg 129  Q
    ||||||||||||||||||||| ||| | ||| ||||||||||||| |||||| | |||| |||| ||||||    
T  3364053 atctgaattagattttatcagatttctgcttttatattctcctgtactagaaaagatgattgtggagcctg 3364123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 3380256 - 3380351
Alignment:
Q  36 atagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 131  Q
    ||||||| ||||| |||||  | ||| ||||||||||||||  ||||| ||||||| ||||||||| | |||||| | |||| |||||||| ||||    
T  3380256 atagatgacatctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgctagaaaagatgattgtgaagcatgtt 3380351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 20936137 - 20936248
Alignment:
Q  20 agtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgact 119  Q
    |||||||| ||||  |||||||||||||| |||||| | ||  ||||||||||||||||  ||| ||||||||||||||||||| |||||| | ||||||    
T  20936137 agtgcgacatgtgacgatagatggcatctttggtaacaaattggaattagattttatcaaatttctacttctatattctcctgtgctagaaaagatgact 20936236  T
Q  120 gtgaagcctgtt 131  Q
    ||||||||||||    
T  20936237 gtgaagcctgtt 20936248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 20954375 - 20954489
Alignment:
Q  17 tcaagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatg 116  Q
    ||||||||||| ||||  ||| |||||||||| |||||  |  |  ||||||||||||||||  ||| ||||||||||||||||  | |||||| | |||    
T  20954375 tcaagtgcgacatgtggcgattgatggcatctttggtaccaatttggaattagattttatcaaatttctacttctatattctcccatgctagaaaagatg 20954474  T
Q  117 actgtgaagcctgtt 131  Q
    ||| |||||||||||    
T  20954475 actctgaagcctgtt 20954489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 20924566 - 20924610
Alignment:
Q  59 atctgaattagattttatcaggtttttacttctatattctcctgt 103  Q
    ||||||||||||||||||||| ||| ||||||| ||||| |||||    
T  20924566 atctgaattagattttatcagatttctacttctctattcacctgt 20924610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 17971163 - 17971233
Alignment:
Q  59 atctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctg 129  Q
    ||||||||||||||| || || ||| |||||| |||||||||||| ||  || | ||||||||||||||||    
T  17971163 atctgaattagatttcattagatttctacttcaatattctcctgttcttcaaaagatgactgtgaagcctg 17971233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 21238956 - 21239025
Alignment:
Q  59 atctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcct 128  Q
    |||||| |||||||||||||| ||| |||||||  |||||||| |  ||||| | |||||||||||||||    
T  21238956 atctgagttagattttatcagatttctacttctcaattctcctatgttagaaaagatgactgtgaagcct 21239025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 21239067 - 21239135
Alignment:
Q  170 gttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttatt 238  Q
    ||||||||| || || ||| |||||||||| |||||  ||||||||| ||||||||||||  |||||||    
T  21239067 gttcaagagtgcatcgggagaagctgaagttatttaccatgtggaagactcttcataatgaattttatt 21239135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University