View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_high_1 (Length: 556)
Name: NF15926_high_1
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 52 - 536
Target Start/End: Complemental strand, 56277728 - 56277241
Alignment:
| Q |
52 |
tcaaaatcaaaagcaagagctatgctatcagtaatgtgacattgaggagggcagttgaattgaatccagtctttgtttgaaggattacagagatagatgg |
151 |
Q |
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| T |
56277728 |
tcaaaatcaaaagcaagagctatgctatcagttatgtcacattgaggagggcagttgaattgaataaagtctttgtttgaaggattgcagagatagatgg |
56277629 |
T |
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| Q |
152 |
ttggatttggggaaggaaaacaggtacggcagcaaagaattcctttacaagatgacaaaagcacaacatcttgaggaagaaaagaaaaaacattgtggtg |
251 |
Q |
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| T |
56277628 |
ttggatttggggaaggaaaacaggtacggcagcaaacaattcctttacaggaagccaaaacaacaacatcttgaggaagaaaagaaaaaacattgtggtg |
56277529 |
T |
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| Q |
252 |
aacaactagtttagcagcgtt---tttgggttggacaggaatgtaactaatggttttaacatcgtgtttgcagaacatgtacctatcttgaacaataaaa |
348 |
Q |
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| T |
56277528 |
aacaactagtttagcagcgttgtttttgggttccacaggaatgtaactaatggttttaacatcgtgtttgcagaacatgtacctatcttgaacaataaaa |
56277429 |
T |
|
| Q |
349 |
gcatttaaaacaagattagtgtttttgagttgatctttgatgaatgaacggcttgaaatgatgttgttccaccctctggaaatgcatttcatgctaagca |
448 |
Q |
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| T |
56277428 |
ccatttaaaacaagatttgtgtttttgagttgatctttgatgaatgaacggcttgaaatgatgtggttccaacctctggaaatgcatttcatgctaagca |
56277329 |
T |
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| Q |
449 |
aaggcttggccggaacgcgtgtgagaatatgagagattacgtctctgttcagagacccctcctcaatctcatcattctcaaccttaag |
536 |
Q |
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| T |
56277328 |
aaggtttggccggaacgcgtgtgagaatatgagagatgacgtctctgttgagagaaccctcctcactctcatcactatcaaccttaag |
56277241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 56277785 - 56277747
Alignment:
| Q |
1 |
tacttctgaatgcgtttcacccttaccaatttgaatttg |
39 |
Q |
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| T |
56277785 |
tacttctgaatgcgtttcacccttaccaatttgaatttg |
56277747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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