View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_high_10 (Length: 367)
Name: NF15926_high_10
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 7189725 - 7189387
Alignment:
| Q |
11 |
atgaaatgagcataggttgctaaacaagtaaatgaaatgagcatatgaatcataataatgttgaaatattcatggatcacatcaatatgataaat-gaaa |
109 |
Q |
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| T |
7189725 |
atgaaatgagcataggttgctaagcaagtaaatgaaatgagcatatgaatcataataatgttgaaatattcatggatcacatcaatatgataaattgaaa |
7189626 |
T |
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| Q |
110 |
agttaacatttgaagtgatagttcaatggtaagaatttagttttataattttaatatataaaattcaaatacatttagagtcaattgtaaaaatgatcga |
209 |
Q |
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| T |
7189625 |
agttaacacttgaggtgataattcaatggtaagaatttagttttataattttaatatataaagttcaaatacatttagagtcagttgtaaaaatgatcaa |
7189526 |
T |
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| Q |
210 |
tataccactttaatcaatnnnnnnntaaaagataattcgaaattttaactcacacaagtcaattggaacatattttttcccgcctcatgcacaagctcag |
309 |
Q |
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| T |
7189525 |
tataccactttaatcaataaaaa---aaaatataactcgaaattttaactcacacaagtcaattggaacattttttttcctgcctcatgcacaagctcag |
7189429 |
T |
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| Q |
310 |
ggtgtggcacaagaacatgctcaggttgtgtctcgtgagagg |
351 |
Q |
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| T |
7189428 |
gttgtggcacaaggacatgctcaggttgtgtctcgcgagagg |
7189387 |
T |
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