View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_high_14 (Length: 337)
Name: NF15926_high_14
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 5269912 - 5269603
Alignment:
| Q |
20 |
ttaaggcccaa-tttaggcaatgactggtgaacgggaacaaatagagtttgtagctatcttgcagtcagatgcaatgaactgaacatgttcctccatcac |
118 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5269912 |
ttaaggcccaactttaggcaatgactggtgaacgggaacaaatagagtttgtagctagcttgcagtcagatgcaatgaattgaacatgttcctccatcat |
5269813 |
T |
|
| Q |
119 |
tattttgttaatcaacttcagcaaaacttgttccaattcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaa |
218 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
5269812 |
aattttgttaatcaaattcatcaaaacttgttccaattcttctccatcactccaaccatgaatttcagccttaacaagtgaaggatctttgcatatcaaa |
5269713 |
T |
|
| Q |
219 |
tcccaaactggaaagttcttccttggcatcacaaagtctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacc |
318 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5269712 |
tcccacactggaaaattcttccttggcatcacaaagtctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaatc |
5269613 |
T |
|
| Q |
319 |
tcttcttctc |
328 |
Q |
| |
|
|||||||||| |
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| T |
5269612 |
tcttcttctc |
5269603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 77 - 322
Target Start/End: Original strand, 5275808 - 5276053
Alignment:
| Q |
77 |
cttgcagtcagatgcaatgaactgaacatgttcctccatcactattttgttaatcaacttcagcaaaacttgttccaattcttctccatcactccaacca |
176 |
Q |
| |
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|||||| || |||| ||| || ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5275808 |
cttgcaatctgatgaaataaattgaacatgttcctccatcataattttgttaatcaaattcatcaaaacttgttccaattcttctccatcactccaacca |
5275907 |
T |
|
| Q |
177 |
tgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagtctctttctctaagcctcaagc |
276 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5275908 |
tgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccacactggaaaattcttccttggcatcacaaagtctctttctctaagcctcaaac |
5276007 |
T |
|
| Q |
277 |
tagggcaatagtccccagcaccatcaccaaggtagataaacctctt |
322 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5276008 |
tagggcaatagtcccctgcaccatcaccaaggtagataaacctctt |
5276053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 156 - 322
Target Start/End: Original strand, 5271898 - 5272064
Alignment:
| Q |
156 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
255 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
5271898 |
tcttctccatcacaccaaccatgaatttcagccttaacaagtgaagggtctttgcatatcaaatcccacactggaaaattcttccttggcatcacaaagt |
5271997 |
T |
|
| Q |
256 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacctctt |
322 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
5271998 |
ctctctctttaaacctcaagctagggcaataatctccagcaccatcaccaaggtagataaacctctt |
5272064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 156 - 328
Target Start/End: Complemental strand, 5251931 - 5251759
Alignment:
| Q |
156 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
255 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| || | |
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| T |
5251931 |
tcttctccatcacaccaaccatgaatttcagccttaacaagtgaagggtctttgcatatcaaatcccacactggaaaattcttccttggcatcatgaaat |
5251832 |
T |
|
| Q |
256 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacctcttcttctc |
328 |
Q |
| |
|
|| | ||||||||||| || ||||| ||||| || ||| |||||||||||||||||||||||||| ||||| |
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| T |
5251831 |
ctttctctctaagccttaaactaggacaataatctccaatgccatcaccaaggtagataaacctcttgttctc |
5251759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 194 - 322
Target Start/End: Complemental strand, 14945163 - 14945035
Alignment:
| Q |
194 |
aagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagtctctttctctaagcctcaagctagggcaatagtcccca |
293 |
Q |
| |
|
|||| |||| ||||| |||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||| ||| |
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| T |
14945163 |
aagtaaagggtcttttcatatcaagtcccatactggaaagttcttccttgacataacaaagtctctttctctaagtctcaaactagggcaatagtctcca |
14945064 |
T |
|
| Q |
294 |
gcaccatcaccaaggtagataaacctctt |
322 |
Q |
| |
|
|||||||||| |||||||||| ||||| |
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| T |
14945063 |
ataccatcaccatggtagataaatctctt |
14945035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 156 - 316
Target Start/End: Original strand, 26314296 - 26314456
Alignment:
| Q |
156 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
255 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||| |
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| T |
26314296 |
tcttctccatcactccattcataaattttagctttaacaagtgaaggatctttgcatatcaagtcccatacaggaaaattcttccttggcatcacaaagt |
26314395 |
T |
|
| Q |
256 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaa |
316 |
Q |
| |
|
|| ||||| |||| || ||||| || ||||| || ||| |||||||||||| |||||||| |
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|
| T |
26314396 |
ctttttctttaaggcttaagcttggacaataatctccactaccatcaccaagatagataaa |
26314456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 156 - 328
Target Start/End: Original strand, 43109245 - 43109417
Alignment:
| Q |
156 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaagttcttccttggcatcacaaagt |
255 |
Q |
| |
|
||||| ||||||||||| ||| ||||| |||||| |||||||||||||||||||| || |||||||| || ||||| |||||||||||||||||||||| |
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|
| T |
43109245 |
tcttcaccatcactccattcataaattttagctttaacaagtgaaggatctttgcaaattaaatcccacacaggaaaattcttccttggcatcacaaagt |
43109344 |
T |
|
| Q |
256 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacctcttcttctc |
328 |
Q |
| |
|
|| ||||| ||||||||||||| || ||||| || ||| |||||| ||||| ||||||||||| || ||||| |
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|
| T |
43109345 |
ctttttctttaagcctcaagcttggacaataatctccactaccatccccaagatagataaaccttttattctc |
43109417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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