View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_high_19 (Length: 264)
Name: NF15926_high_19
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 8944818 - 8945033
Alignment:
| Q |
23 |
agtctaactagaatctgtttgcattgaagttgaggttttctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtgattcaa |
122 |
Q |
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| T |
8944818 |
agtctaactagaatctgtttgcattgaagttgaggttttctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtgattcaa |
8944917 |
T |
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| Q |
123 |
cttttttcattagtggtaaactatattcatctctaaattaacttggttagactcattatcactcatcacattatttcaatatatgaaaaatggatgcata |
222 |
Q |
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| T |
8944918 |
cttttttcattagtggtaaacgatattcatctctaaattaactttgttagactcattatcactcatcacattatttcaatatatgaaaaatggatgcata |
8945017 |
T |
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| Q |
223 |
tccttggtttattgca |
238 |
Q |
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| T |
8945018 |
tccttggtttactgca |
8945033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 8964364 - 8964272
Alignment:
| Q |
56 |
ggttttctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaactatat |
148 |
Q |
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| T |
8964364 |
ggttttctttcatctacagtttcatcaatttcatttgtactttctctatttttaatttgtaattcaacttttccaattagtggtaaacgatat |
8964272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 21685541 - 21685627
Alignment:
| Q |
62 |
ctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaactatat |
148 |
Q |
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| T |
21685541 |
ctttcatctctagttccatcaatttcactttttctgtctattttcttaatatataattcaacttttttaattggtggtaaacgatat |
21685627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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