View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15926_high_21 (Length: 252)

Name: NF15926_high_21
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15926_high_21
NF15926_high_21
[»] chr6 (2 HSPs)
chr6 (23-62)||(12463702-12463741)
chr6 (25-61)||(23294296-23294332)
[»] chr5 (2 HSPs)
chr5 (18-61)||(17364227-17364270)
chr5 (23-62)||(22962270-22962309)
[»] scaffold0111 (1 HSPs)
scaffold0111 (27-61)||(30270-30304)
[»] chr7 (5 HSPs)
chr7 (27-61)||(16094793-16094827)
chr7 (131-251)||(16192203-16192327)
chr7 (18-61)||(3170296-3170339)
chr7 (27-62)||(20148671-20148706)
chr7 (23-61)||(11774055-11774093)
[»] scaffold0417 (1 HSPs)
scaffold0417 (30-62)||(3669-3701)
[»] scaffold0013 (1 HSPs)
scaffold0013 (131-251)||(6047-6170)
[»] chr4 (1 HSPs)
chr4 (183-251)||(3462249-3462320)
[»] chr1 (1 HSPs)
chr1 (18-62)||(21719742-21719786)
[»] chr8 (2 HSPs)
chr8 (18-61)||(24624929-24624972)
chr8 (27-62)||(25263330-25263365)


Alignment Details
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 12463702 - 12463741
Alignment:
Q  23 cttaaaattcatagttgttgttggtgataagttgttttgg 62  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  12463702 cttaaaattcatagttgttgttagtgataagttgttttgg 12463741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 23294296 - 23294332
Alignment:
Q  25 taaaattcatagttgttgttggtgataagttgttttg 61  Q
    ||||||||||||||||||||| |||||||||||||||    
T  23294296 taaaattcatagttgttgttgctgataagttgttttg 23294332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 17364270 - 17364227
Alignment:
Q  18 atgttcttaaaattcatagttgttgttggtgataagttgttttg 61  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  17364270 atgtgcttaaaattcatagttgttgttgttgataagttgttttg 17364227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 22962309 - 22962270
Alignment:
Q  23 cttaaaattcatagttgttgttggtgataagttgttttgg 62  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  22962309 cttaaaattcatggttgttgttgttgataagttgttttgg 22962270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 30270 - 30304
Alignment:
Q  27 aaattcatagttgttgttggtgataagttgttttg 61  Q
    |||||||||||||||||||||||||||||||||||    
T  30270 aaattcatagttgttgttggtgataagttgttttg 30304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 16094827 - 16094793
Alignment:
Q  27 aaattcatagttgttgttggtgataagttgttttg 61  Q
    |||||||||||||||||||||||||||||||||||    
T  16094827 aaattcatagttgttgttggtgataagttgttttg 16094793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 251
Target Start/End: Complemental strand, 16192327 - 16192203
Alignment:
Q  131 tagtctatatgacgaacgaggaagtgtgctagagaaggatg--aatagcaattttcatttttcaaaaggtt--gcggaaacatagattaacaagtgtatg 226  Q
    ||||||||||||| ||| | |||||| |||||||  || ||  ||||||| ||||| || |||||||||||  ||  |||| | |||||||||| |||||    
T  16192327 tagtctatatgacaaactaagaagtgcgctagaggggggtgtcaatagcatttttcgttcttcaaaaggttttgcaaaaacgtggattaacaagagtatg 16192228  T
Q  227 actattgaatttgtgcgtgatgatg 251  Q
    ||||| |||||||||||| ||||||    
T  16192227 actatcgaatttgtgcgtaatgatg 16192203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 3170296 - 3170339
Alignment:
Q  18 atgttcttaaaattcatagttgttgttggtgataagttgttttg 61  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||    
T  3170296 atgtgcttaaaactcatagttgttgttgttgataagttgttttg 3170339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 20148706 - 20148671
Alignment:
Q  27 aaattcatagttgttgttggtgataagttgttttgg 62  Q
    |||||||||||||||||||||||||||||| |||||    
T  20148706 aaattcatagttgttgttggtgataagttgctttgg 20148671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 11774055 - 11774093
Alignment:
Q  23 cttaaaattcatagttgttgttggtgataagttgttttg 61  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  11774055 cttaaacttcatagttgttgttgttgataagttgttttg 11774093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 3701 - 3669
Alignment:
Q  30 ttcatagttgttgttggtgataagttgttttgg 62  Q
    |||||||||||||||||||||||||||||||||    
T  3701 ttcatagttgttgttggtgataagttgttttgg 3669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 6047 - 6170
Alignment:
Q  131 tagtctatatgacgaacgaggaagtgtgctagagaaggatgaatagcaatttt-catttttcaaaaggtt--gcggaaacatagattaacaagtgtatga 227  Q
    |||||| |||||||||| || ||||| || ||||  || ||||||||| |||| | ||||||||||||||  ||| |||| | |||| ||||   |||||    
T  6047 tagtctctatgacgaactagaaagtgcgcaagagggggctgaatagcactttttcgtttttcaaaaggttttgcgaaaacgtggattcacaaaactatga 6146  T
Q  228 ctattgaatttgtgcgtgatgatg 251  Q
    ||||||||||||||| ||||||||    
T  6147 ctattgaatttgtgcatgatgatg 6170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 3462249 - 3462320
Alignment:
Q  183 tcatttttcaaaaggtt--gcggaaacatagattaacaagtgtatgact-attgaatttgtgcgtgatgatg 251  Q
    |||||||||||||||||  ||| || | |||||||||||| |||||||| |||| |||||||||||||||||    
T  3462249 tcatttttcaaaaggttttgcgaaagcgtagattaacaagagtatgactaattgcatttgtgcgtgatgatg 3462320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 21719786 - 21719742
Alignment:
Q  18 atgttcttaaaattcatagttgttgttggtgataagttgttttgg 62  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||    
T  21719786 atgtgcttaaacttcatagttgttgttgttgataagttgttttgg 21719742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 24624972 - 24624929
Alignment:
Q  18 atgttcttaaaattcatagttgttgttggtgataagttgttttg 61  Q
    |||| |||||||||||| |||||||||| |||||||||||||||    
T  24624972 atgtgcttaaaattcatggttgttgttgttgataagttgttttg 24624929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 25263365 - 25263330
Alignment:
Q  27 aaattcatagttgttgttggtgataagttgttttgg 62  Q
    ||||||||||||||| ||||||||||||||||||||    
T  25263365 aaattcatagttgttattggtgataagttgttttgg 25263330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University