View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_high_22 (Length: 247)
Name: NF15926_high_22
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 31499573 - 31499377
Alignment:
| Q |
1 |
attttcacctttataaccaaaccctcaccggtagaggctgcaccatgcatagtttcattccgaacattccagaacgactccagggggaaataggctagcc |
100 |
Q |
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| T |
31499573 |
attttcacctttataaccaaaccctcaccggtagaggctgcaacatgcatagtttcattccgaacattccagaacgactccagggggaaataggctagcc |
31499474 |
T |
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| Q |
101 |
agatgtgatttgatttgacagtaaaaagactttcaatgagaattactggaatactggtagtgcaattcctcttgccatggatttcaacaaattccag |
197 |
Q |
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| T |
31499473 |
agatgtgatttgatttgacagtaaaaagactttcaatgagaattactggaatactggtagtgcaattcctcttgccatggatttcaacaaattccag |
31499377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 31504679 - 31504577
Alignment:
| Q |
51 |
agtttcattccgaacattccagaacgactccagggggaaataggctagccagatgtgatttgatttgacagtaaaaagactttcaatgagaattactgga |
150 |
Q |
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| T |
31504679 |
agtttcattcaaaacatcccaggacgactccagggggaaataggttagccaaacatgatttgatttgactgtaataagactttcactaagatttactgga |
31504580 |
T |
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| Q |
151 |
ata |
153 |
Q |
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| T |
31504579 |
ata |
31504577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 31479478 - 31479409
Alignment:
| Q |
85 |
gggaaataggctagccagatgtgatttgatttgacagtaaaaagactttcaatgagaattactggaatac |
154 |
Q |
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| T |
31479478 |
gggaaataggttagccagatgtgatttgatttggccgtaataagtctgtcattgagagttacttgaatac |
31479409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 31473021 - 31472953
Alignment:
| Q |
84 |
ggggaaataggctagccagatgtgatttgatttgacagtaaaaagactttcaatgagaattactggaat |
152 |
Q |
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| T |
31473021 |
ggggaaataggttaaccagatgtggtttaatttgatcgtaataaggctttcgttgagaattactggaat |
31472953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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