View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_high_6 (Length: 436)
Name: NF15926_high_6
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Complemental strand, 5114391 - 5113990
Alignment:
| Q |
20 |
actagtgctttctgttgaagttgttgtgattgtgctaccaccattgctcatgtcataaaaaccatcaattgttctatccattatttgctgttggttcaca |
119 |
Q |
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| T |
5114391 |
actagtgctttctgttgaagttgttgtgattgtgctaccaccattgctcatgtcataaaaaccatcaattgttctatccattatttgctgttggttcaca |
5114292 |
T |
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| Q |
120 |
catacaagctcacttaaatcccttggaaaattttcaaacccttgaaatatatgtgatggttggcaatttccaccattgtttgtaattgtattactcacca |
219 |
Q |
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| T |
5114291 |
catacaagctcacttaaatcccttggaaaattttcaaacccttgaaatatatgtgatggttggcaatttccaccattgtttgtaattgtattactcacca |
5114192 |
T |
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| Q |
220 |
tggaaaaagggtttggaatgttcattaaacttgtgaaggatgtttgattgttcgtatcataatcaattatggatgaatttgaaactggcataggatgaac |
319 |
Q |
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| T |
5114191 |
tggaaaaagggtttggaatgttcattaaacttgtgaaggatgtttgattgttcgtatcataatcaattatggatgaatttgaaactggcataggatgaac |
5114092 |
T |
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| Q |
320 |
agaatactctgcaggccaataaggagctgaactcatactattgacacccgaagccgccatcatcaaattctgatttgtttctcttttcatctcttgtttc |
419 |
Q |
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| T |
5114091 |
agaatactctgcaggccaatatggtgctgaactcatactattgacacccaaagccgccatcatcaaattctgatttgtttctcttttcatctcttgtttc |
5113992 |
T |
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| Q |
420 |
at |
421 |
Q |
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| T |
5113991 |
at |
5113990 |
T |
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