View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_low_14 (Length: 350)
Name: NF15926_low_14
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 19620432 - 19620590
Alignment:
| Q |
18 |
agatctggtactatatagctagaagatgtagtgatttcttacaagtggaatcgatgcctaattgaggaacttcaagaagtatatggcgaccaagttatct |
117 |
Q |
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| T |
19620432 |
agatctggtactatatagctagaagatgtagtgatttcttacaagtggaatcgatgcctaattgaggaacttcaagaagtatatggcgaccaagttatct |
19620531 |
T |
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| Q |
118 |
cggtctcggtagcaatcaatttagggaccaatatttctaatcggttgctaaatgaatat |
176 |
Q |
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| T |
19620532 |
cggtctcggtagcaatcaatttagggaccaatatttgtaatcggtcgctaaatgaatat |
19620590 |
T |
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Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 170 - 342
Target Start/End: Original strand, 19620616 - 19620789
Alignment:
| Q |
170 |
tgaatatagctaatgttagcaactgatttagtaaccg-atttgatattttcaatctctaaatcggccattaaatcaatcgctacaaagcatttctttagc |
268 |
Q |
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|||| ||||||||||||||| ||||||||| |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19620616 |
tgaacatagctaatgttagcgactgatttaataactggatttgatatttttaatctctaaatcggccattaaatcaatcgctacaaagcatttatttagc |
19620715 |
T |
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| Q |
269 |
atacatatgaaaaataaagcatatatttcacaatttatcacttgaacattgcttgtaattgtgggattcatctc |
342 |
Q |
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| T |
19620716 |
atacatatgaaaaataaagcatatatttcacaatttatcacttgaacattgcttgtaattgtgggattcatctc |
19620789 |
T |
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