View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_low_18 (Length: 295)
Name: NF15926_low_18
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_low_18 |
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| [»] scaffold0989 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 14409484 - 14409212
Alignment:
| Q |
18 |
ttgaaaatgaaatttttccaaatgtgatgaatcaactagaaattttattta----------aagtacacacttcaagaataaatacctggttttgttgga |
107 |
Q |
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| T |
14409484 |
ttgaaaatgaaatttttccaaatgtgaggaatcaactagaaattttatttacaaaacaatgaagcgcacacttcaagaataaatacctggttttgctgga |
14409385 |
T |
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| Q |
108 |
cttgttggaagtttccaactggacgcatacccatcccgtgtccaggatgaccttgcctctgaagttggtatggcaggatataatttggagcaattgcaga |
207 |
Q |
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| T |
14409384 |
cttgttggaagtttccaactggacgcatacccatcccgtgtccaggatgaccttgcctctgaagttggtatggcaggatgtaatttggagcaactgcaga |
14409285 |
T |
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| Q |
208 |
tcgcatacctggtatcaattgttgcgggtatccgtatcaagttggtatgggaggatgtatttagttagcatat |
280 |
Q |
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| T |
14409284 |
tcgcatacctggtatcaattgttgctggtatccgtatcaagttggtatgggaggatgtatttagttagcatat |
14409212 |
T |
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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 245
Target Start/End: Original strand, 14395363 - 14395527
Alignment:
| Q |
75 |
acacttcaagaataaatacctggttttgttggacttgttggaagtttccaactggacgcatacccatcccgtgtccaggatgaccttgcctctgaagttg |
174 |
Q |
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| T |
14395363 |
acacttaatgaataaatacctggttctgctgcacttgttggaagttaccaactggaggcat------cctatgtccggtatgaccgtgcctctgagggtg |
14395456 |
T |
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| Q |
175 |
gtatggcaggatataatttggagcaattgcagatcgcatacctggtatcaattgttgcgggtatccgtatc |
245 |
Q |
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| T |
14395457 |
gtatggcatgatgtaatttggagcaactccagattgcataccgggtatgaattgttgctggtatccgtatc |
14395527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 3515 - 3645
Alignment:
| Q |
18 |
ttgaaaatgaaatttttccaaatgtgatgaatcaa---ctagaaattttattta----------aagtacacacttcaagaataaatacctggttttgtt |
104 |
Q |
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| T |
3515 |
ttgaaaatgaaatttttccaaatgtgaggaatcaattactagaaattttatttacaaaacaatgaagcgcacacttcaagaataaatacctggttttgct |
3614 |
T |
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| Q |
105 |
ggacttgttggaagtttccaactggacgcat |
135 |
Q |
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| T |
3615 |
ggacttgttggaagtttccaactggacgcat |
3645 |
T |
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