View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_low_2 (Length: 483)
Name: NF15926_low_2
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 254 - 483
Target Start/End: Original strand, 32437721 - 32437954
Alignment:
| Q |
254 |
gagatatctcaatgtgatggattttgctttctatcagcatttggagattgagttacaattcttgtaattttgattacttacattttcatatatagcatac |
353 |
Q |
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| T |
32437721 |
gagatatctcaatgtgatggattttgctttccatcagcatttggagattgagttacaattcttgtaattttgattatttacatattcatatatagcatac |
32437820 |
T |
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| Q |
354 |
atatgtttattctatatatt----taataaaataaatattgttgagattttcactttatcttcactctcaaatgtgatttctaacagtttcttgtataat |
449 |
Q |
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| T |
32437821 |
atatgtttattctatatatttatttaataaaataaatattgttgagattttcactttatcttcactctcaaatgtgatttctaacagtttcttgtataat |
32437920 |
T |
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| Q |
450 |
tttttgtttgatgatatgaaaatattgcaatgat |
483 |
Q |
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| T |
32437921 |
tttttgtttgatgatatgaaaatattgcaatgat |
32437954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 32437480 - 32437626
Alignment:
| Q |
12 |
aacctgtgaggattaagcttgggaaattgaagcttcccaaaattaatttcagggttaggtgtactattgtggtggatagtcttagtgctaataattctat |
111 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32437480 |
aacctgtgaggatcaagcttgggaaattgaagcttcccaaaattaatttcagggtcaggtgtacaattgtggtggatagtcttagtgctaataattctat |
32437579 |
T |
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| Q |
112 |
tagaattaggagcagtagttgtaaatttaggtttaggctttgaattc |
158 |
Q |
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| T |
32437580 |
tagaattaggagcagtagttgtaaatttaggtttaggctttgaattc |
32437626 |
T |
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