View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15926_low_20 (Length: 290)

Name: NF15926_low_20
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15926_low_20
NF15926_low_20
[»] chr3 (7 HSPs)
chr3 (1-212)||(3211361-3211572)
chr3 (88-212)||(3207954-3208076)
chr3 (210-284)||(3212029-3212103)
chr3 (83-212)||(3191037-3191164)
chr3 (210-284)||(14071927-14072005)
chr3 (210-284)||(17388276-17388354)
chr3 (1-37)||(3195562-3195598)
[»] chr1 (4 HSPs)
chr1 (210-284)||(17986380-17986458)
chr1 (210-284)||(52755556-52755629)
chr1 (210-284)||(19364474-19364552)
chr1 (239-284)||(28207735-28207780)
[»] scaffold0031 (1 HSPs)
scaffold0031 (210-284)||(77649-77727)
[»] chr7 (5 HSPs)
chr7 (210-284)||(17946535-17946613)
chr7 (210-284)||(9311331-9311409)
chr7 (210-283)||(9258845-9258922)
chr7 (210-284)||(3210941-3211019)
chr7 (239-284)||(8787482-8787527)
[»] chr5 (2 HSPs)
chr5 (210-284)||(17408925-17409003)
chr5 (210-284)||(21382084-21382162)
[»] chr4 (2 HSPs)
chr4 (210-284)||(7197020-7197098)
chr4 (240-284)||(16954112-16954156)
[»] chr6 (1 HSPs)
chr6 (210-271)||(20105861-20105926)
[»] chr2 (1 HSPs)
chr2 (210-284)||(23704072-23704150)
[»] scaffold0072 (1 HSPs)
scaffold0072 (210-283)||(60515-60591)
[»] scaffold0011 (1 HSPs)
scaffold0011 (212-283)||(162290-162364)
[»] chr8 (2 HSPs)
chr8 (239-284)||(1990695-1990740)
chr8 (210-284)||(22818036-22818114)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 3211361 - 3211572
Alignment:
Q  1 tatactgtttgtagaaaagcatccaccacaaccaatacaccacaaatgacaaaaacagaaaaagaaaggctctccatcaaccaaaaatggcacgtccagt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3211361 tatactgtttgtagaaaagcatccactacaaccaatacaccacaaatgacaaaaacagaaaaagaaaggctctccatcaaccaaaaatggcacgtccagt 3211460  T
Q  101 gggaaaatacaacctttaccactgnnnnnnnttcatttttctacgtcatgattaggtttgatgtatgcacatgagctttggaaagactctcaacaatata 200  Q
    ||||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3211461 gggaaaatacaacctttaccactgaaaaaaattcatttttctacgttatgattaggtttgatgtatgcacatgagctttggaaagactctcaacaatata 3211560  T
Q  201 aaccaactatca 212  Q
    ||||||||||||    
T  3211561 aaccaactatca 3211572  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 3207954 - 3208076
Alignment:
Q  88 tggcacgtccagtgggaaaatacaacctttaccactgnnnnnnnttcatttttctacgtcatgattaggtttgatgtatgcacatgagctttggaaagac 187  Q
    |||||||  |||||||| |||||||||||||||| ||       |||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||     
T  3207954 tggcacgctcagtgggacaatacaacctttaccattgaaaag--ttcattttcctaggtcatgattaggtttgatgtatgcacatgagctatggaatgag 3208051  T
Q  188 tctcaacaatataaaccaactatca 212  Q
    ||||||||||||||| |||||||||    
T  3208052 tctcaacaatataaagcaactatca 3208076  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 3212029 - 3212103
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccacacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||||||||    
T  3212029 tcagagaggtagcacggcccgtgctcccacacggccgtgccaaacttcagggttctcttttgttgtttttgcttc 3212103  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 3191037 - 3191164
Alignment:
Q  83 aaaaatggcacgtccagtgggaaaatacaacctttaccactgnnnnnnnttcatttttctacgtcatgattaggtttgatgtatgcacatgagctttgga 182  Q
    |||| |||||||| |||||||| |||||||||||||||| ||       || ||||| |||  |||||||||||||||||||||||||||||||| ||||    
T  3191037 aaaattggcacgttcagtgggacaatacaacctttaccattgaaaaa--tttattttcctagatcatgattaggtttgatgtatgcacatgagctatgga 3191134  T
Q  183 aagactctcaacaatataaaccaactatca 212  Q
    | || ||||||||||||||| |||||||||    
T  3191135 atgagtctcaacaatataaagcaactatca 3191164  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 14072005 - 14071927
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||| |||||||| ||||||||||    |||||||||||||| ||||||||||||||||| ||| ||||||||    
T  14072005 tcagagaggtggcacggcctgtgctcccactagcacggccgtgccaagcttcagggttctcttttgctgcttttgcttc 14071927  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 17388276 - 17388354
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||| |||||||||| ||||||||    |||||||||||||| ||||| |||||||||| |||| ||||||||    
T  17388276 tcagagaggtggcacggcccgcgctcccactggcacggccgtgccaagcttcagagttctcttttattgcttttgcttc 17388354  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3195562 - 3195598
Alignment:
Q  1 tatactgtttgtagaaaagcatccaccacaaccaata 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3195562 tatactgtttgtagaaaagcatccactacaaccaata 3195598  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 17986380 - 17986458
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||| |||||||||||||||||||    |||||||||||||| ||||||||||||||||||||| ||||||||    
T  17986380 tcagagaggtggcacggcccgtgctcccactggcacggccgtgccaagcttcagggttctcttttgttgcttttgcttc 17986458  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 52755629 - 52755556
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccacacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||||||||||||| ||| ||||||||    
T  52755629 tcagagaggtggcacggcccgtgctcccact-ggccgtgccaagcttcagggttctcttttgctgcttttgcttc 52755556  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 19364474 - 19364552
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||| ||| |||||||||||||||    |||| | ||||||| ||||||||||||||||| ||| ||||||||    
T  19364474 tcagagaggtggcagggcccgtgctcccaccggcacggtcatgccaaggttcagggttctcttttgctgcttttgcttc 19364552  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 28207735 - 28207780
Alignment:
Q  239 cacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  28207735 cacggccgtgccaagcttcagggttctcttttgctgcatttgcttc 28207780  T

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Target: scaffold0031 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 77649 - 77727
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||| |||||||||||||||||||    |||||||||||||| ||||||||||||||||| ||| ||||||||    
T  77649 tcagagaggtggcacggcccgtgctcccactggcacggccgtgccaagcttcagggttctcttttgctgcttttgcttc 77727  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 17946535 - 17946613
Alignment:
Q  210 tcagagaggtagcacggcccgtgctccca----cacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||| |||| |||||||||||||    ||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  17946535 tcagagaggtggcacagcccgtgctcccagtggcacggccgtgccaagcttcagggttctcttttgctgcttttgcttc 17946613  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 9311331 - 9311409
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    ||||| |||| |||||||||||||||||||    ||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  9311331 tcagacaggtggcacggcccgtgctcccactggcacggctgtgccaagcttcagggttctcttttgctgcttttgcttc 9311409  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 9258922 - 9258845
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgctt 283  Q
    ||||| |||| |||||||||||||||||||    ||||| |||||||| ||||||||||||||||| ||| |||||||    
T  9258922 tcagacaggtggcacggcccgtgctcccactggcacggctgtgccaagcttcagggttctcttttgctgcttttgctt 9258845  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 3211019 - 3210941
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||| | || ||||||||||||||||    |||||||||||||| | ||| ||||||||||| ||| ||||||||    
T  3211019 tcagagagatggcccggcccgtgctcccactggtacggccgtgccaagctacagagttctcttttgctgcttttgcttc 3210941  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 8787527 - 8787482
Alignment:
Q  239 cacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    ||||||||||||||| |||||||| |||||||| ||| ||||||||    
T  8787527 cacggccgtgccaagcttcagggtgctcttttgctgcttttgcttc 8787482  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 17409003 - 17408925
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||| |||||||||||||||||||    |||| ||||||||| ||||||||||||||||| ||| ||||||||    
T  17409003 tcagagaggtggcacggcccgtgctcccactagcacggtcgtgccaagcttcagggttctcttttgctgcttttgcttc 17408925  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 21382084 - 21382162
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||| | ||||| |||||||||||||    |||||||||||||||||  ||||||||||||||||| ||||||||    
T  21382084 tcagagagatggcacgacccgtgctcccactggcacggccgtgccaagtttatgggttctcttttgttgcttttgcttc 21382162  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 7197020 - 7197098
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||| |||||||||||||||||||    |||||| ||||||| ||||||||||||||||| ||| ||||||||    
T  7197020 tcagagaggtggcacggcccgtgctcccactggcacggccatgccaagcttcagggttctcttttgctgcttttgcttc 7197098  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 16954156 - 16954112
Alignment:
Q  240 acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||||||| |||||||| |||||||| ||| ||||||||    
T  16954156 acggccgtgccaagcttcagggtgctcttttgctgcttttgcttc 16954112  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 20105926 - 20105861
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttg 271  Q
    |||||||||| |||||||||||||||||||    |||||||||||||| |||||||||||||||||    
T  20105926 tcagagaggtggcacggcccgtgctcccactagcacggccgtgccaagcttcagggttctcttttg 20105861  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 23704072 - 23704150
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    ||||||| || |||||||||||||||||||    |||||||||||||| ||||||||||||||||| | | ||||||||    
T  23704072 tcagagaagtggcacggcccgtgctcccactggcacggccgtgccaagcttcagggttctcttttgctacttttgcttc 23704150  T

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Target: scaffold0072 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 60515 - 60591
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgctt 283  Q
    |||||||||| |||||||| ||||||||||    |||||||||||||| ||||| | ||||||||||||| |||||||    
T  60515 tcagagaggtggcacggcctgtgctcccactggcacggccgtgccaagcttcagag-tctcttttgttgcttttgctt 60591  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 162290 - 162364
Alignment:
Q  212 agagaggtagcacggcccgtgctccca----cacggccgtgccaagtttcagggttctcttttgttgcctttgctt 283  Q
    |||||||| ||||||||||||||||||    || |||||||||||| ||||| | ||||||||||||| |||||||    
T  162290 agagaggtggcacggcccgtgctcccactggcatggccgtgccaagcttcagag-tctcttttgttgcttttgctt 162364  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 1990740 - 1990695
Alignment:
Q  239 cacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  1990740 cacggctgtgccaagcttcagggttctcttttgctgcttttgcttc 1990695  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 22818036 - 22818114
Alignment:
Q  210 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 284  Q
    |||||||||| ||||||||| |||||||||    ||| |||||||||| ||||||||||| ||||  ||| ||||||||    
T  22818036 tcagagaggtggcacggcccatgctcccactagcacgaccgtgccaagcttcagggttctttttttctgcttttgcttc 22818114  T

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