View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_low_23 (Length: 264)
Name: NF15926_low_23
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3211376 - 3211143
Alignment:
| Q |
1 |
ttctacaaacagtataataaggatatttcaatttgctatcaaaacattaacttatataaaactaaaatagtattgatatttagcttcatacctaatggga |
100 |
Q |
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| T |
3211376 |
ttctacaaacagtataataaggatatttcaatttgctatcaaaacattaacttatataaaactaaaatagtattgatatttagcttcatacctaatggga |
3211277 |
T |
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| Q |
101 |
ttttgcacttcagaatgaaatatttcgttaatgatctcaacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtag |
200 |
Q |
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| T |
3211276 |
ttttgcacttcagaatgaaatatttcgttaatgatctcaacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtag |
3211177 |
T |
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| Q |
201 |
ctagtctagtcaaagttgaagtcatcaagctaat |
234 |
Q |
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| T |
3211176 |
ctagtctagtcaaagttgaagtcatcaagctaat |
3211143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 3195307 - 3195138
Alignment:
| Q |
65 |
aaatagtattgatatttagcttcatacctaatgggattttgcacttcagaatgaaatatttcgttaatgatctcaacacctacctaaattgattttcaga |
164 |
Q |
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| T |
3195307 |
aaatagtattgatatttaacttcatacctaatgagattctgcacttcatatggtaatatttacttaatgatctcaagacatacctaaattgatattcaga |
3195208 |
T |
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| Q |
165 |
cacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagctaat |
234 |
Q |
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| T |
3195207 |
cacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagctaat |
3195138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 3218746 - 3218676
Alignment:
| Q |
138 |
caacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtcta |
208 |
Q |
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| T |
3218746 |
caacacctacctaaatttatattcagcctcaatgttcctctcatcaatcaaacaacatggtagctattcta |
3218676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3195577 - 3195535
Alignment:
| Q |
1 |
ttctacaaacagtataataaggatatttcaatttgctatcaaa |
43 |
Q |
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| T |
3195577 |
ttctacaaacagtataataaggatatttcaatttgctatcaaa |
3195535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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