View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15926_low_28 (Length: 227)
Name: NF15926_low_28
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 25988311 - 25988531
Alignment:
| Q |
1 |
actatgactatcatcattattacagctcaaaaagtatccaccaaaatctacacctcactttcttaattctatcttctaatacacattcactattcatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25988311 |
actatgactatcatcattattacagctcaaaaagtatccaccaaaatctacacctcactttcttaattctatcttctaatacacattcactattcatcaa |
25988410 |
T |
|
| Q |
101 |
aacgaggcttcactattttccttaaaagctcattttccaatctctcatcaagctttgttgttgatctcaatgtttgtttgtggcacagaaaatgctacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25988411 |
aacgaggcttcactattttccttaaaagctcattttccaatctctcatcaagctttgttgttgatctcaatgtttgtttgtggcatagaaaatgctacaa |
25988510 |
T |
|
| Q |
201 |
gcttgatcaaa-gtgatgatg |
220 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
25988511 |
gcttgatcaaaggtgatgatg |
25988531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University