View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_low_3 (Length: 470)
Name: NF15926_low_3
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_low_3 |
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| [»] scaffold0989 (1 HSPs) |
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Alignment Details
Target: scaffold0989 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 2866 - 2613
Alignment:
| Q |
1 |
gccttatcttagattcatcaggannnnnnncacatttctgttaggaatttgacttttgagctgttctgtcagattgatcagttattaactttcattgttt |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2866 |
gccttatcttagattcatcaggatttttttcacatttctgttaggaatttgacttgtgagctgttctgttagattgatcagttattaactttcattgttt |
2767 |
T |
|
| Q |
101 |
atggataatcctttactttgtttagacatattatttgcatctactttagattggggaattcaaccaaagtgcattagcttccaaattttgtggggcaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
2766 |
atggataatcctttactttgtttagacatattatttgcatctaatttagatt-gggaattcaaccaaagtgcattagcttccaaattttgtgg----ctt |
2672 |
T |
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| Q |
201 |
gcacagtattatttcttgctggctctctaataatcatcattttcacttttctttctgtattt |
262 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
2671 |
cca---tattatgtcttgctggctctctaataatcatcattttctctattctttctgtattt |
2613 |
T |
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Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 353 - 456
Target Start/End: Original strand, 6030118 - 6030222
Alignment:
| Q |
353 |
aatctattttccccttgtaattcgaatttggttatgtttt-ttagatggctgtgtttataaataataaactgggttgagttttttaatgatttgctggat |
451 |
Q |
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|||||||||||||| |||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6030118 |
aatctattttccccctgtaatccgaatttggttatgtttttttagatggatgtgtttataaataataaactgggttgagttttttaatgatttgctggat |
6030217 |
T |
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| Q |
452 |
attct |
456 |
Q |
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|||| |
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| T |
6030218 |
tttct |
6030222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 353 - 456
Target Start/End: Original strand, 45280840 - 45280943
Alignment:
| Q |
353 |
aatctattttccccttgtaattcgaatttggttatgttttttagatggctgtgtttataaataataaactgggttgagttttttaatgatttgctggata |
452 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
45280840 |
aatctattttccccccgtaatccgaatttggttatgttttttagatggctgtgtttataaataataaattgggttgtgttttttaatgatttgctggatt |
45280939 |
T |
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| Q |
453 |
ttct |
456 |
Q |
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|||| |
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| T |
45280940 |
ttct |
45280943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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