View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_low_30 (Length: 206)
Name: NF15926_low_30
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 8400273 - 8400446
Alignment:
| Q |
19 |
attaaatcatctttcaatgtcccaaaacttcctaaagttctttccatagctccaaatataagaccaagtagaaaattaattgaggaattaaacggccaac |
118 |
Q |
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| T |
8400273 |
attaaatcatctttcaatgtcccaaaacttcctaaagttctttccatagctccaaatataagaccaagtagaaaactaattgaggaattaaacggccaac |
8400372 |
T |
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| Q |
119 |
tcaaacacacaatcccaataatgattcaagaaaatgattatcattattcacccaagtacaattctccttcttct |
192 |
Q |
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| T |
8400373 |
tcaaacacacaatcccaataatgattcaagaaaatgattatcattattcacccaagtacaattctccttcttct |
8400446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 8421850 - 8422023
Alignment:
| Q |
19 |
attaaatcatctttcaatgtcccaaaacttcctaaagttctttccatagctccaaatataagaccaagtagaaaattaattgaggaattaaacggccaac |
118 |
Q |
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| T |
8421850 |
attaaatcctctttcaatgttccaaaactccctaaagctctttccatagttccaaaaacaagaccaagcaggaagctgtttgaagaattaaacggtcaac |
8421949 |
T |
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| Q |
119 |
tcaaacacacaatcccaataatgattcaagaaaatgattatcattattcacccaagtacaattctccttcttct |
192 |
Q |
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| T |
8421950 |
tcatacacacaatcccaataatgattcaagaaaatgattatcattattcacccaagtacaattctccttcttct |
8422023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 8369131 - 8368964
Alignment:
| Q |
22 |
aaatcatctttcaatgtcccaaaacttcctaaagttctttccatagctccaaatataagaccaagtagaaaattaattgaggaattaaacggccaactca |
121 |
Q |
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| T |
8369131 |
aaatcatctttcaatgtcccaaaactccctaaagttctttccatagttccaaaaacaagaccaagcagaaagctatttgaggagttaaacggccaactta |
8369032 |
T |
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| Q |
122 |
aacacacaatcccaataatgattcaagaaaatgattatcattattcacccaagtacaattctccttcttct |
192 |
Q |
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| T |
8369031 |
cacacacaatcccaataataattcaagaaaatgattatc---attcacccaagtactattccccttcttct |
8368964 |
T |
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