View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15926_low_31 (Length: 203)
Name: NF15926_low_31
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 38184435 - 38184636
Alignment:
| Q |
1 |
ttgttgcataactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184435 |
ttgttgcataactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaata |
38184534 |
T |
|
| Q |
101 |
gcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaaccccgacaacaccaccac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38184535 |
gcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaacatcgacaacaccaccac |
38184634 |
T |
|
| Q |
201 |
ca |
202 |
Q |
| |
|
|| |
|
|
| T |
38184635 |
ca |
38184636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 38179766 - 38179965
Alignment:
| Q |
1 |
ttgttgcataactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38179766 |
ttgttgcataactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctattggacaaaata |
38179865 |
T |
|
| Q |
101 |
gcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaaccccgacaacaccaccac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38179866 |
gcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaacaccgacaacaccaccac |
38179965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 38169964 - 38170153
Alignment:
| Q |
13 |
tttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtacca |
112 |
Q |
| |
|
||||| ||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
38169964 |
ttttttatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtacca |
38170063 |
T |
|
| Q |
113 |
aatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaaccccgacaacaccaccacca |
202 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||| || ||||| ||| | ||| ||||| | |||||| |||||||| |
|
|
| T |
38170064 |
aatgaaacataaacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttgagtcaacacggacaacgtcaccacca |
38170153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 35053988 - 35053880
Alignment:
| Q |
29 |
acccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaacca |
128 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||| || ||||||||||| ||||||||| ||||||| | | ||||||||||||||||||||| |
|
|
| T |
35053988 |
acccacaagaatggaaatccacaatccaacaaagcatgtgcaatttcctccctttgtctctcagacaaaacaaagtaactaccaaatgaaacataaacca |
35053889 |
T |
|
| Q |
129 |
cagacgatt |
137 |
Q |
| |
|
|||| |||| |
|
|
| T |
35053888 |
cagaagatt |
35053880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University