View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15926_low_5 (Length: 465)

Name: NF15926_low_5
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15926_low_5
NF15926_low_5
[»] chr5 (8 HSPs)
chr5 (148-449)||(42487879-42488181)
chr5 (1-71)||(42488258-42488327)
chr5 (192-262)||(26799145-26799216)
chr5 (193-259)||(15410465-15410531)
chr5 (193-324)||(21522726-21522865)
chr5 (193-324)||(21533292-21533431)
chr5 (186-268)||(41995440-41995522)
chr5 (193-314)||(15382453-15382579)
[»] chr7 (8 HSPs)
chr7 (193-261)||(5235962-5236030)
chr7 (186-261)||(48246828-48246903)
chr7 (198-262)||(7197311-7197375)
chr7 (193-262)||(27945017-27945086)
chr7 (197-261)||(3938123-3938187)
chr7 (192-252)||(18226920-18226979)
chr7 (193-261)||(26733280-26733348)
chr7 (203-259)||(30516374-30516430)
[»] chr4 (7 HSPs)
chr4 (193-261)||(14126126-14126194)
chr4 (193-279)||(20521846-20521932)
chr4 (209-261)||(1213236-1213287)
chr4 (193-261)||(30838186-30838254)
chr4 (197-267)||(2234230-2234300)
chr4 (193-262)||(27706191-27706260)
chr4 (209-261)||(35952632-35952684)
[»] chr2 (12 HSPs)
chr2 (197-261)||(16069269-16069333)
chr2 (186-262)||(20539688-20539764)
chr2 (186-261)||(15349809-15349884)
chr2 (186-261)||(21782833-21782908)
chr2 (193-261)||(29663985-29664054)
chr2 (274-326)||(18571026-18571078)
chr2 (194-261)||(1374620-1374687)
chr2 (197-314)||(30404815-30404929)
chr2 (195-257)||(10547947-10548011)
chr2 (193-262)||(12940949-12941018)
chr2 (186-262)||(21624235-21624312)
chr2 (229-261)||(2628446-2628478)
[»] chr1 (10 HSPs)
chr1 (204-314)||(38078626-38078733)
chr1 (192-261)||(16927200-16927269)
chr1 (197-261)||(52903229-52903293)
chr1 (199-261)||(19324544-19324606)
chr1 (193-262)||(5927354-5927423)
chr1 (208-261)||(34257925-34257978)
chr1 (193-262)||(47989474-47989542)
chr1 (193-261)||(398780-398848)
chr1 (201-261)||(13997867-13997927)
chr1 (203-259)||(26462662-26462718)
[»] chr3 (9 HSPs)
chr3 (192-262)||(10219674-10219745)
chr3 (184-262)||(3610600-3610678)
chr3 (186-258)||(16000034-16000106)
chr3 (193-259)||(10504920-10504986)
chr3 (195-261)||(21419470-21419536)
chr3 (193-262)||(14216868-14216937)
chr3 (193-262)||(14222997-14223066)
chr3 (185-250)||(28678271-28678336)
chr3 (206-262)||(47775714-47775770)
[»] scaffold0136 (1 HSPs)
scaffold0136 (193-262)||(3863-3932)
[»] chr8 (7 HSPs)
chr8 (193-262)||(4673439-4673508)
chr8 (193-262)||(24669409-24669478)
chr8 (194-262)||(18170496-18170564)
chr8 (194-262)||(18634064-18634132)
chr8 (193-262)||(4298900-4298969)
chr8 (193-262)||(22651952-22652021)
chr8 (203-259)||(29519181-29519237)
[»] chr6 (11 HSPs)
chr6 (193-262)||(426528-426597)
chr6 (193-262)||(12696300-12696369)
chr6 (193-261)||(9658855-9658923)
chr6 (198-249)||(677818-677869)
chr6 (193-268)||(8805580-8805655)
chr6 (190-261)||(13851709-13851780)
chr6 (191-261)||(3398593-3398662)
chr6 (193-250)||(7625098-7625155)
chr6 (197-262)||(23771559-23771623)
chr6 (182-262)||(24831772-24831853)
chr6 (193-261)||(7086771-7086839)
[»] scaffold0022 (1 HSPs)
scaffold0022 (188-261)||(90814-90887)
[»] scaffold0018 (1 HSPs)
scaffold0018 (193-262)||(192263-192332)
[»] scaffold0171 (1 HSPs)
scaffold0171 (193-261)||(23396-23464)
[»] scaffold0007 (1 HSPs)
scaffold0007 (193-261)||(225283-225351)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 148 - 449
Target Start/End: Complemental strand, 42488181 - 42487879
Alignment:
Q  148 gttcttaaagactaccccactataatgcaagaatatgaacactgaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatata 247  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42488181 gttcttaaagactaccccactataatgcacaaatatgaacactgaacacgacacagacactgacacgtcgacaccgttgataatttaataaaattatata 42488082  T
Q  248 attcaatgtaattacgtgtcgtgacggtgtcgaatacgacacatatcctacaccaggacacgcctaacctaaagagtat-catgcttgataactacccat 346  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||| ||||||| ||||    
T  42488081 attcaatgtaattacatgtcgtgacggtgtcgaatacgacacatatccaacaccaagacacgcctaacctaaagagtatccgtgcttcataactatccat 42487982  T
Q  347 aatatttgttagtaacatttttctaaatataaatggagtgttagtcaacaaaacatattttaaatcgactgaaaccaaaaccaaaactaaagaatgatgc 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42487981 aatatttgttagtaacatttttctaaatataaatggagtgttagtcaacaaaacatattttaaatcgactgaaaccaaaaccaaaactaaagaatgatgc 42487882  T
Q  447 tat 449  Q
    |||    
T  42487881 tat 42487879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 42488327 - 42488258
Alignment:
Q  1 cttccatagttccattacataccaggatcttattaacgagtgtctcaaaacatcttttaacgatctcaatt 71  Q
    ||||||||||||||||| ||| |||| |||| || ||||||||||||||||||| ||||||||||||||||    
T  42488327 cttccatagttccattatatatcagggtcttgttgacgagtgtctcaaaacatc-tttaacgatctcaatt 42488258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 26799145 - 26799216
Alignment:
Q  192 aacacgacacagacactgacacgtcgacactgttgataattt-aataaaattatataattcaatgtaattac 262  Q
    ||||||||||||| ||||| |||||||||| ||| ||| ||| || ||||| ||||||||||||||||||||    
T  26799145 aacacgacacagatactgatacgtcgacacagttaatagtttaaaaaaaataatataattcaatgtaattac 26799216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 15410531 - 15410465
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaat 259  Q
    ||||||||| |||||||||||| |||||| | | ||||||||| |||||||||| ||||| ||||||    
T  15410531 acacgacacggacactgacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaat 15410465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 324
Target Start/End: Original strand, 21522726 - 21522865
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac--------gtgtcgtgacggtgtcgaatac 284  Q
    ||||||||| |||||||||||| |||||| | | ||||||| | ||||| | |||||||| |||||||||        |||||||| |||||||| | ||    
T  21522726 acacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacac 21522825  T
Q  285 gacacatatcctacaccaggacacgcctaacctaaagagt 324  Q
    ||||| | |||  |||| |||||||||||| | |||||||    
T  21522826 gacacgtgtccggcaccgggacacgcctaatccaaagagt 21522865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 324
Target Start/End: Original strand, 21533292 - 21533431
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac--------gtgtcgtgacggtgtcgaatac 284  Q
    ||||||||| |||||||||||| |||||| | | ||||||| | ||||| | |||||||| |||||||||        |||||||| |||||||| | ||    
T  21533292 acacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacac 21533391  T
Q  285 gacacatatcctacaccaggacacgcctaacctaaagagt 324  Q
    ||||| | |||  |||| |||||||||||| | |||||||    
T  21533392 gacacgtgtccggcaccgggacacgcctaatccaaagagt 21533431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 41995440 - 41995522
Alignment:
Q  186 acactgaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattacgtgtcg 268  Q
    |||||| | |||||||||||||||||||| ||||||   | ||||||  | ||||| | ||||||||||||||||| ||||||    
T  41995440 acactggatacgacacagacactgacacgccgacacaactaataattcgaaaaaatcacataattcaatgtaattaagtgtcg 41995522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 15382453 - 15382579
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataattt--aataaaattatataattcaatgtaattac--gtgtcg-tgacggtgtcgaatacgac 287  Q
    ||||||||| |||| ||||||| |||||| | | |||||||  || ||||| |||||||||| | |||||||  |||||| || |||||| | | |||||    
T  15382453 acacgacacggacaatgacacgccgacacagctaataatttgaaaaaaaatcatataattcagtataattacaagtgtcggtgtcggtgttggacacgac 15382552  T
Q  288 acatatcctacaccaggacacgcctaa 314  Q
    |||| ||| ||||| ||||||||||||    
T  15382553 acatgtccgacaccgggacacgcctaa 15382579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 5235962 - 5236030
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||||||||||||||||||||||||||| | | ||||||||| |||||||||||||| | ||||||||    
T  5235962 acacgacacagacactgacacgtcgacaccgctaataatttaagaaaattatataatttagtgtaatta 5236030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 48246903 - 48246828
Alignment:
Q  186 acactgaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||| |||||||||||||||| ||||||||||||||||||  |||||| | ||||| | | || ||||||||||||    
T  48246903 acacagaacacgacacagacaatgacacgtcgacactgttattaatttgagaaaatcacacaactcaatgtaatta 48246828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 7197375 - 7197311
Alignment:
Q  198 acacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||||||| ||||||| |||||| | | ||||||||| ||||| || |||||||||||||||||    
T  7197375 acacagacattgacacgccgacacagctaataatttaaaaaaatcatttaattcaatgtaattac 7197311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 27945017 - 27945086
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||||||| |||||||||||| ||||||   | ||||||| | ||||||| |||||||| |||||||||    
T  27945017 acacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattac 27945086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 3938123 - 3938187
Alignment:
Q  197 gacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||||| ||||||||| |||| ||| |  ||||||||| ||||| | |||||||||||||||||    
T  3938123 gacacaggcactgacacatcgatactataaataatttaaaaaaatcacataattcaatgtaatta 3938187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 18226920 - 18226979
Alignment:
Q  192 aacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattca 252  Q
    ||||||| ||| | |||||||||| || |||||||||||||| ||||||| ||||||||||    
T  18226920 aacacgatacacatactgacacgttgatactgttgataattt-ataaaatcatataattca 18226979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 26733280 - 26733348
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||||||| ||||||||||||||||||| | | ||||||| | ||||| | |||||||| | ||||||    
T  26733280 acacgacacggacactgacacgtcgacaccgctaataatttgacaaaatcacataattcagtctaatta 26733348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 30516430 - 30516374
Alignment:
Q  203 gacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaat 259  Q
    ||||||||||||||||||||    ||||||| | ||||| |||||||||||||||||    
T  30516430 gacactgacacgtcgacactaacaataatttgagaaaatgatataattcaatgtaat 30516374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 14126194 - 14126126
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||||||||||||||| ||||| |||||||||| ||||||| ||||| | | |||||||| ||||||||    
T  14126194 acacgacacagacactaacacgccgacactgttaataatttgataaagtcacataattcagtgtaatta 14126126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 20521932 - 20521846
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattacgtgtcgtgacggtgtcg 279  Q
    ||||||||| |||||||||||| ||| || | | ||||||| ||||||| | ||||||||||| ||| | |||||||| ||||||||    
T  20521932 acacgacacggacactgacacgccgataccgataataatttgataaaatcacataattcaatgaaatcatgtgtcgtgtcggtgtcg 20521846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 1213287 - 1213236
Alignment:
Q  209 gacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||| ||||||||    
T  1213287 gacacgttgacactgttaataatttaa-aaaattatataattcagtgtaatta 1213236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 30838186 - 30838254
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||| ||| |||||||| ||||||| |||| | ||||||| |||||||||||||||| | ||||||||    
T  30838186 acacggcacggacactgatacgtcgatactgctaataatttgataaaattatataatttagtgtaatta 30838254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 2234230 - 2234300
Alignment:
Q  197 gacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattacgtgtc 267  Q
    |||||||| |||||||||  | ||| ||||||||||| | ||||| | ||||||||||||||||| |||||    
T  2234230 gacacagatactgacacgctgtcaccgttgataatttgagaaaatcacataattcaatgtaattatgtgtc 2234300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 27706260 - 27706191
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||||||  |||||||||||||||||||  || ||||||||| ||||| | |||||| | |||||||||    
T  27706260 acacgacagggacactgacacgtcgacacaattaataatttaaaaaaatcacataatttagtgtaattac 27706191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 35952684 - 35952632
Alignment:
Q  209 gacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||||| || ||||| | ||||||| ||||||| |||||||||||||||||||    
T  35952684 gacacgccgccactgctaataatttgataaaatcatataattcaatgtaatta 35952632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 16069333 - 16069269
Alignment:
Q  197 gacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||| |||||||||||| |||||| ||| ||||||||| ||||| |||||||||| ||||||||    
T  16069333 gacacggacactgacacgccgacaccgttaataatttaaaaaaatcatataattcagtgtaatta 16069269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 20539764 - 20539688
Alignment:
Q  186 acactgaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    |||||| ||||||||| ||||||||||||||||||| | | ||||||| | ||||| |||||||| | |||||||||    
T  20539764 acactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaattac 20539688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 15349809 - 15349884
Alignment:
Q  186 acactgaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||| |||||||||||||||| ||||||||||| ||||||  |||||||| ||||| | |||||| ||| ||||||    
T  15349809 acaccgaacacgacacagacaatgacacgtcgatactgttagtaatttaaaaaaatcacataatttaatataatta 15349884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 21782908 - 21782833
Alignment:
Q  186 acactgaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||||| |||||||||| ||||||||||| |||||||| | ||||||| | ||||| | |||||||| ||||||||    
T  21782908 acactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcacataattcagtgtaatta 21782833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 29663985 - 29664054
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaat-tatataattcaatgtaatta 261  Q
    |||||||||||||||||||| ||||||| || | ||||||| | ||||| ||||||||||| ||||||||    
T  29663985 acacgacacagacactgacatgtcgacagtgctaataatttgaaaaaatatatataattcagtgtaatta 29664054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 18571026 - 18571078
Alignment:
Q  274 gtgtcgaatacgacacatatcctacaccaggacacgcctaacctaaagagtat 326  Q
    |||||||| |||| |||||||| |||||||||||||||||| || ||||||||    
T  18571026 gtgtcgaacacgatacatatccgacaccaggacacgcctaatctgaagagtat 18571078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 1374687 - 1374620
Alignment:
Q  194 cacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||||| ||||||||||||||||||| | || ||||||||| | ||||| |||||| | ||||||||    
T  1374687 cacgacatagacactgacacgtcgacattcttaataatttaaaagaattacataatttagtgtaatta 1374620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 30404929 - 30404815
Alignment:
Q  197 gacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattacgtgtcgtgacggtgtcgaatacgacacatatcct 296  Q
    ||||| |||||||||||| |||||| ||| ||||||| | ||||| | |||||||| |||||||||     ||| ||| |||| | ||||||||| |||     
T  30404929 gacacggacactgacacgccgacacggttaataatttgaaaaaatcacataattcagtgtaattac---aagtgtcggcgtcggacacgacacatgtccg 30404833  T
Q  297 acaccaggacacgcctaa 314  Q
    ||||||||||| ||||||    
T  30404832 acaccaggacatgcctaa 30404815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 10548011 - 10547947
Alignment:
Q  195 acgacacagacactgacacgtcgacactgttgataatttaa--taaaattatataattcaatgta 257  Q
    ||||||| ||||||||||||||||||| ||| |||||||||   ||||| |||||||||| ||||    
T  10548011 acgacacggacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 10547947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 12941018 - 12940949
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||||||| ||||||||||||| |||||   | ||||||| | ||||| |||||||||| |||||||||    
T  12941018 acacgacacggacactgacacgttgacacaactaataatttgaaaaaatcatataattcagtgtaattac 12940949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 21624235 - 21624312
Alignment:
Q  186 acactgaacacgacacagacactgacacgtcgacactgttgataa-tttaataaaattatataattcaatgtaattac 262  Q
    |||| |||||||||||||||||||||||| |||||| | | |||| ||||| |||||   |||||||| |||||||||    
T  21624235 acaccgaacacgacacagacactgacacgccgacacagctaataattttaaaaaaatagcataattcagtgtaattac 21624312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 2628446 - 2628478
Alignment:
Q  229 aatttaataaaattatataattcaatgtaatta 261  Q
    ||||| |||||||||||||||||||||||||||    
T  2628446 aatttcataaaattatataattcaatgtaatta 2628478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 314
Target Start/End: Complemental strand, 38078733 - 38078626
Alignment:
Q  204 acactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattacgtgtcgtgacggtgtcgaatacgacacatatcctacaccag 303  Q
    |||||||||||||||||| | | ||||||| | ||||| | ||||||||||||||||||     ||| |||||||| | ||||||||| | | |||||||    
T  38078733 acactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattac---aagtgtcggtgtcggacacgacacatgttcaacaccag 38078637  T
Q  304 gacacgcctaa 314  Q
    |||||||||||    
T  38078636 gacacgcctaa 38078626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 16927269 - 16927200
Alignment:
Q  192 aacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||||||||||||||||||||||||| ||  | | ||||||| | ||||| |||||||||| ||||||||    
T  16927269 aacacgacacagacactgacacgtcggcatagctaataatttgaaaaaatcatataattcagtgtaatta 16927200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 52903229 - 52903293
Alignment:
Q  197 gacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||| |||||| ||||| ||| || ||| ||||||||||||||| |||||||||| ||||||||    
T  52903229 gacacggacactaacacgccgataccgttaataatttaataaaatcatataattcagtgtaatta 52903293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 19324544 - 19324606
Alignment:
Q  199 cacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||| |||||| |||||||||||| ||||||||| | ||||| | |||||||| ||||||||    
T  19324544 cacaggcactgatacgtcgacactgctgataatttgagaaaatcacataattcagtgtaatta 19324606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 5927423 - 5927354
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||||||| ||||||||||||   |||||| | ||||||| | ||||| |||||||| |||||||||||    
T  5927423 acacgacacggacactgacacgctaacactgctaataatttgaaaaaatcatataatttaatgtaattac 5927354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 34257978 - 34257925
Alignment:
Q  208 tgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||||||||||||| ||| ||||||||||||||| | |||||| | ||||||||    
T  34257978 tgacacgtcgacaccgttaataatttaataaaatcacataatttagtgtaatta 34257925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 47989474 - 47989542
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    |||||||||||||||||||||| ||||||   | ||||||||| ||||| | |||||||| |||||||||    
T  47989474 acacgacacagacactgacacgccgacac-aataataatttaaaaaaatcacataattcagtgtaattac 47989542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 398848 - 398780
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||||||| |||||||||||| |||||| | | ||||||| | ||||| | |||||||| ||||||||    
T  398848 acacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaatta 398780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 13997867 - 13997927
Alignment:
Q  201 cagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||||||||||||| |||||| ||| || |||||| ||||| | |||||||| ||||||||    
T  13997867 cagacactgacacgccgacaccgttaattatttaaaaaaatcacataattcagtgtaatta 13997927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 26462718 - 26462662
Alignment:
Q  203 gacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaat 259  Q
    ||||| ||||||||||||||| | ||||||||| ||||| | |||||| ||||||||    
T  26462718 gacaccgacacgtcgacactgataataatttaagaaaatgaaataattgaatgtaat 26462662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 10219674 - 10219745
Alignment:
Q  192 aacacgacacagacactgacacgtcgacactgttgataattt-aataaaattatataattcaatgtaattac 262  Q
    ||||||||||||| ||||| |||||||||| ||| ||| ||| || ||||| ||||||||||||||||||||    
T  10219674 aacacgacacagatactgatacgtcgacacagttaatagtttaaaaaaaataatataattcaatgtaattac 10219745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 3610600 - 3610678
Alignment:
Q  184 gaacactgaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    |||||| | |||||||||||||||||||||| | |||| ||| ||||||||| ||||| | |||| ||| |||||||||    
T  3610600 gaacaccggacacgacacagacactgacacgccaacacagttaataatttaaaaaaataacataactcagtgtaattac 3610678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 16000106 - 16000034
Alignment:
Q  186 acactgaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaa 258  Q
    |||| |||||||||||||||||||||||| ||||||   | ||||||||| ||||| | |||||||| |||||    
T  16000106 acaccgaacacgacacagacactgacacgccgacacaactaataatttaaaaaaataacataattcagtgtaa 16000034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 10504986 - 10504920
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaat 259  Q
    |||||||| || |||||||||||| |||| | | ||||||| | |||||||||||||||||| ||||    
T  10504986 acacgacataggcactgacacgtcaacaccgataataatttgaaaaaattatataattcaatataat 10504920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 21419536 - 21419470
Alignment:
Q  195 acgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||||||||| | ||| |||| || || ||| ||||||||| ||||| |||||||||||||||||||    
T  21419536 acgacacagatagtgatacgttgataccgttaataatttaagaaaataatataattcaatgtaatta 21419470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 14216868 - 14216937
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||||||| |||||||||||||||||||   | ||||||| | || || |||||||||| |||||||||    
T  14216868 acacgacacggacactgacacgtcgacacaactaataattttaaaatatcatataattcagtgtaattac 14216937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 14222997 - 14223066
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||||||| |||||||||||||||||||   | ||||||| | || || |||||||||| |||||||||    
T  14222997 acacgacacggacactgacacgtcgacacaactaataattttaaaatatcatataattcagtgtaattac 14223066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 28678271 - 28678336
Alignment:
Q  185 aacactgaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataatt 250  Q
    |||||| ||||||||| ||||||||||| | |||| ||| | ||||||||||||||| | ||||||    
T  28678271 aacactaaacacgacatagacactgacatgccgacgctgctaataatttaataaaatcacataatt 28678336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 47775714 - 47775770
Alignment:
Q  206 actgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||| |||||||||| | | ||||| ||| ||||| ||||||||||||||||||||    
T  47775714 actgatacgtcgacacggataataatctaaaaaaatgatataattcaatgtaattac 47775770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 3932 - 3863
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    |||||||||||||||||| | | |||||| ||| ||||||||| ||||| | |||||||| |||||||||    
T  3932 acacgacacagacactgatatgccgacacggttaataatttaaaaaaatcacataattcagtgtaattac 3863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 4673508 - 4673439
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    |||||||||||||||||||||| |||||| | | ||||||| | ||||| ||| |||||| |||||||||    
T  4673508 acacgacacagacactgacacgccgacacagataataatttgaaaaaatcataaaattcagtgtaattac 4673439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 24669409 - 24669478
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||||||||||||||||||||  ||||| ||| ||||||| |  |||||| |||||||| |||||||||    
T  24669409 acacgacacagacactgacacgctgacaccgttaataatttgaggaaattacataattcagtgtaattac 24669478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 18170564 - 18170496
Alignment:
Q  194 cacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    |||||||| |||||||||||| ||||||  || | ||||| | ||||||| ||||||||||||||||||    
T  18170564 cacgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattcaatgtaattac 18170496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 18634132 - 18634064
Alignment:
Q  194 cacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    |||||||| |||||||||||| ||||||  || | ||||| | ||||||| ||||||||||||||||||    
T  18634132 cacgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattcaatgtaattac 18634064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 4298969 - 4298900
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    |||||||||||| ||| ||||| |||||| ||| ||||||| | ||||| | |||||| |||||||||||    
T  4298969 acacgacacagatactaacacgccgacacagttaataatttgaaaaaatcacataatttaatgtaattac 4298900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 22651952 - 22652021
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||||||| |||||||||||| |||||| | | ||||||| | ||||| | |||||||||| |||||||    
T  22651952 acacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattac 22652021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 29519181 - 29519237
Alignment:
Q  203 gacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaat 259  Q
    |||||||||||||| |||| | | ||||||| | ||||| |||||||||||||||||    
T  29519181 gacactgacacgtcaacaccgataataattttaaaaaatcatataattcaatgtaat 29519237  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 426597 - 426528
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||||||| |||||||||||| |||||| ||| ||||||| | ||||| | |||||| |||||||||||    
T  426597 acacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattac 426528  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 12696300 - 12696369
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||||||| |||||||||||| |||||| | | ||||||| | ||||||| |||||||| |||||||||    
T  12696300 acacgacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattac 12696369  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 9658855 - 9658923
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||||||| |||||||||||| |||||| | | ||||||||| ||||| | |||||||| ||||||||    
T  9658855 acacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaatta 9658923  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 677818 - 677869
Alignment:
Q  198 acacagacactgacacgtcgacactgttgataatttaataaaattatataat 249  Q
    ||||||||||||||||| |||||||||| ||||||| | ||||| |||||||    
T  677818 acacagacactgacacgccgacactgttaataatttgagaaaatcatataat 677869  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 8805655 - 8805580
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattacgtgtcg 268  Q
    ||||||||||||||| ||||||||| ||||| | ||||||| | ||||| | |||||| | |||||||| ||||||    
T  8805655 acacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaattatgtgtcg 8805580  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 13851709 - 13851780
Alignment:
Q  190 tgaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||||||||||| ||||||||||||||||||| | | ||||||| | ||||| |  ||||||| ||||||||    
T  13851709 tgaacacgacacggacactgacacgtcgacaccgctaataatttgagaaaataacgtaattcagtgtaatta 13851780  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 3398593 - 3398662
Alignment:
Q  191 gaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||||||||| |||||||||||| |||||| | | ||||||| | ||||| |||||||||| ||||||||    
T  3398593 gaacacgacacggacactgacacgccgacacagctaataatttga-aaaatcatataattcagtgtaatta 3398662  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 7625098 - 7625155
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataatt 250  Q
    ||||||||||||||| ||||||||||||| | | ||||||| | ||||| ||||||||    
T  7625098 acacgacacagacaccgacacgtcgacacggataataatttgagaaaatgatataatt 7625155  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 23771559 - 23771623
Alignment:
Q  197 gacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    ||||| ||||| |||||| |||||| ||| ||||||||| ||||||||||| |||| |||||||||    
T  23771559 gacacggacacggacacgccgacacagttaataatttaa-aaaattatatacttcagtgtaattac 23771623  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 24831772 - 24831853
Alignment:
Q  182 atgaacactgaacacgacacagacactgacacgtcgacactgttgataattt-aataaaattatataattcaatgtaattac 262  Q
    |||||||||||| |||||||  ||| ||||||| ||||| |||| ||||||| || ||||||||| |||||| | |||||||    
T  24831772 atgaacactgaatacgacacgaacaatgacacgccgacattgttaataatttgaaaaaaattataaaattcagtataattac 24831853  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 7086771 - 7086839
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||||||||||||| ||||||||| ||||| | ||||||| | ||||| | |||||| | ||||||||    
T  7086771 acacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaatta 7086839  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 90814 - 90887
Alignment:
Q  188 actgaacacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||| |||||||||||||||||||||  | ||||  || ||||||| | ||||| |||||||||| ||||||||    
T  90814 actggacacgacacagacactgacacaccaacaccattaataatttgagaaaatcatataattcagtgtaatta 90887  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 192332 - 192263
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaattac 262  Q
    |||||| || |||||||||||| |||||| ||| ||||||| | ||||||| |||||||  |||||||||    
T  192332 acacgatacggacactgacacgccgacaccgttaataatttgagaaaattacataattcggtgtaattac 192263  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 23396 - 23464
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    |||||||||||||||||||||| |||||| | | |||| | || ||||| | |||||||| ||||||||    
T  23396 acacgacacagacactgacacgccgacacagataataactcaaaaaaatcacataattcagtgtaatta 23464  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 225351 - 225283
Alignment:
Q  193 acacgacacagacactgacacgtcgacactgttgataatttaataaaattatataattcaatgtaatta 261  Q
    ||||||||| |||||||||||| |||||| | | ||||||| | ||||| | ||||| |||||||||||    
T  225351 acacgacacggacactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaatta 225283  T

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