View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_low_6 (Length: 448)
Name: NF15926_low_6
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Complemental strand, 38185049 - 38184630
Alignment:
| Q |
13 |
gcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgagcatggtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38185049 |
gcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgaacatggtg |
38184950 |
T |
|
| Q |
113 |
actacatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38184949 |
actacatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagccgtgaccttccctcttttttattatc |
38184850 |
T |
|
| Q |
213 |
ttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctagatgaagaaaccaaccctaaagtacttgttaacaccgttgaagag |
312 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38184849 |
ttcaaatatatatactatcgctactcgatctttcaaagaacaaattcaagttctagatgaagaaaccaaccctacagtacttgttaacaccgttgaagag |
38184750 |
T |
|
| Q |
313 |
tttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgggcggtaaagatccta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184749 |
tttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgggcggtaaagatccta |
38184650 |
T |
|
| Q |
413 |
atgatactttgtctggtggt |
432 |
Q |
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||||||||| |||||||||| |
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| T |
38184649 |
atgatacttcgtctggtggt |
38184630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Complemental strand, 38180380 - 38179961
Alignment:
| Q |
13 |
gcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgagcatggtg |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38180380 |
gcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacagtttttgatatctactattattactttcatgagcatggtg |
38180281 |
T |
|
| Q |
113 |
actacatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatc |
212 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38180280 |
actacgtcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagccgtgaccttccctcttttttattatc |
38180181 |
T |
|
| Q |
213 |
ttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctagatgaagaaaccaaccctaaagtacttgttaacaccgttgaagag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180180 |
ttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctatatgaagaaaccaaccctaaagtacttgttaacaccgttgaagag |
38180081 |
T |
|
| Q |
313 |
tttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgggcggtaaagatccta |
412 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38180080 |
tttgaattagaggcactaaaagccgttgacgttggtaagatcaaaatgataccaatcggaccattgattccatatactttcttgggcggtaaagatccta |
38179981 |
T |
|
| Q |
413 |
atgatactttgtctggtggt |
432 |
Q |
| |
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||||||||| |||| ||||| |
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| T |
38179980 |
atgatacttcgtctagtggt |
38179961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 38170563 - 38170182
Alignment:
| Q |
16 |
aaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgagcatggtgact |
115 |
Q |
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|||||||||| ||||||||||||||||||| | || || ||||||||||| |||||||| |||||||| | |||||||||||||||||| || ||||||| |
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| T |
38170563 |
aaggtggcacatgagcttcacctcccatcaacactgttgtggattcaagcagcaacggtgtttgatatattctattattactttcatgaacacggtgact |
38170464 |
T |
|
| Q |
116 |
acatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatcttc |
215 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||| |||| |
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| T |
38170463 |
acatcacaaacaaatcaaaggatgaaacgtgtttaatatcattaccgggattgtcattctctcttaaaagccgcgaccttccctcttttttattggcttc |
38170364 |
T |
|
| Q |
216 |
aaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctag-atgaagaaaccaaccctaaagtacttgttaacaccgttgaagagtt |
314 |
Q |
| |
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||||| ||||||| | ||| || |||| ||||||| ||||||| |||| | | ||||||||| |||||| | ||||||||| ||||||||||| ||||| |
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| T |
38170363 |
aaatacatacacttttgctcttccatctctcaaagagcaaattc-agttgttgaatgaagaaatcaacccaagagtacttgtgaacaccgttgaggagtt |
38170265 |
T |
|
| Q |
315 |
tgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgg |
397 |
Q |
| |
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|||| | || ||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |
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| T |
38170264 |
tgaactggatgcactgaataaagttgatgttggtaagatcaaaatgatacccatcggaccgttgattccatctgctttcttgg |
38170182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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