View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15926_low_8 (Length: 417)

Name: NF15926_low_8
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15926_low_8
NF15926_low_8
[»] chr4 (1 HSPs)
chr4 (246-378)||(3462521-3462651)
[»] chr7 (2 HSPs)
chr7 (253-382)||(16177727-16177856)
chr7 (296-336)||(17856944-17856984)
[»] chr1 (2 HSPs)
chr1 (246-333)||(22586180-22586267)
chr1 (253-375)||(18895438-18895560)
[»] chr6 (1 HSPs)
chr6 (245-336)||(23142891-23142982)
[»] chr3 (1 HSPs)
chr3 (248-364)||(14801026-14801140)
[»] scaffold0004 (1 HSPs)
scaffold0004 (253-336)||(225877-225961)
[»] chr5 (1 HSPs)
chr5 (301-381)||(17349757-17349837)
[»] scaffold0013 (1 HSPs)
scaffold0013 (314-388)||(6332-6409)
[»] chr2 (1 HSPs)
chr2 (246-375)||(18371721-18371850)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 246 - 378
Target Start/End: Complemental strand, 3462651 - 3462521
Alignment:
Q  246 ttaattgcatatgaattctttgttgaagtcatattaatttgattatgaactttcctttttacatcacttaatctcaattacttcaattgaggttttctca 345  Q
    ||||||||||||| |||||||||| ||| ||| ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | |||||||    
T  3462651 ttaattgcatatggattctttgttaaagacatctta-tttgattgtgaactttcctttttacatcacttaatatcaattacttcaattga-gatttctca 3462554  T
Q  346 atttaattctcacaatcaagtttaaagtaagct 378  Q
    |||| ||||||||||||||||||||||||||||    
T  3462553 atttcattctcacaatcaagtttaaagtaagct 3462521  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 253 - 382
Target Start/End: Original strand, 16177727 - 16177856
Alignment:
Q  253 catatgaattctttgttgaagtcatattaatttgattatgaactttcctttttacatcacttaatctcaattacttcaattgaggttttctcaatttaat 352  Q
    |||||||||||||||||| || | |  |||||||||| | ||||| |||| |||||||||||||||||||||||||||||| || || ||||||||||||    
T  16177727 catatgaattctttgttggagacttcctaatttgattgtcaacttaccttcttacatcacttaatctcaattacttcaatttagattctctcaatttaat 16177826  T
Q  353 tctcacaatcaagtttaaagtaagcttcaa 382  Q
    ||||| ||||||||| ||| ||||||||||    
T  16177827 tctcataatcaagttgaaactaagcttcaa 16177856  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 17856944 - 17856984
Alignment:
Q  296 tttcctttttacatcacttaatctcaattacttcaattgag 336  Q
    ||||||||| |||||| |||||||||||||| |||||||||    
T  17856944 tttccttttaacatcatttaatctcaattacctcaattgag 17856984  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 246 - 333
Target Start/End: Complemental strand, 22586267 - 22586180
Alignment:
Q  246 ttaattgcatatgaattctttgttgaagtcatattaatttgattatgaactttcctttttacatcacttaatctcaattacttcaatt 333  Q
    |||||| |||||||||| |||||||||| ||| |||| |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  22586267 ttaattacatatgaattatttgttgaagacatgttaaattgattgtgaactttcatttttacatcacttaatctcaattacttcaatt 22586180  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 375
Target Start/End: Complemental strand, 18895560 - 18895438
Alignment:
Q  253 catatgaattctttgttgaagtcatattaatttgattatgaactttcctttttacatcacttaatctcaattacttcaattgaggttttctcaattt-aa 351  Q
    ||||||||||  ||||||||  ||  ||||||||||| ||||| |  ||||| || | ||||||||||||||||||||||| || || | ||||||| ||    
T  18895560 catatgaattacttgttgaatacaacttaatttgattgtgaacctatctttt-actttacttaatctcaattacttcaattaagattctttcaatttaaa 18895462  T
Q  352 ttctcacaatcaagtttaaagtaa 375  Q
    ||||||||||||||||| ||||||    
T  18895461 ttctcacaatcaagtttcaagtaa 18895438  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 336
Target Start/End: Complemental strand, 23142982 - 23142891
Alignment:
Q  245 attaattgcatatgaattctttgttgaagtcatattaatttgattatgaactttcctttttacatcacttaatctcaattacttcaattgag 336  Q
    ||||||||||||||||||||||| |||||  || ||||  ||||| |||||||||||||||| ||||||||||||||||| |||| ||||||    
T  23142982 attaattgcatatgaattctttggtgaaggaatgttaaaatgattgtgaactttcctttttatatcacttaatctcaatttcttcgattgag 23142891  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 364
Target Start/End: Original strand, 14801026 - 14801140
Alignment:
Q  248 aattgcatatgaattctttgttgaagtcatattaatttgattatgaactttcctttttacatcacttaatctcaattacttcaattgaggttttctcaat 347  Q
    |||| ||||||||||  ||||| ||  ||| |||||||||||||||||||||  |||||| | ||| || ||||||||||||||||||| || | |||||    
T  14801026 aattacatatgaattacttgttaaatacatcttaatttgattatgaactttc--ttttactttactcaacctcaattacttcaattgagtttctttcaat 14801123  T
Q  348 ttaattctcacaatcaa 364  Q
    || ||||||||||||||    
T  14801124 tttattctcacaatcaa 14801140  T

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Target: scaffold0004 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 336
Target Start/End: Original strand, 225877 - 225961
Alignment:
Q  253 catatgaattctttgttgaagtcatattaatttgattatgaactttcctttt-tacatcacttaatctcaattacttcaattgag 336  Q
    ||||||||||| ||||||||| | | |||| |||||| ||||||||| |||| |||||||||||||||||| |||||||||||||    
T  225877 catatgaattccttgttgaagacgtgttaaattgattgtgaactttcattttttacatcacttaatctcaactacttcaattgag 225961  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 17349757 - 17349837
Alignment:
Q  301 tttttacatcacttaatctcaattacttcaattgaggttttctcaatttaattctcacaatcaagtttaaagtaagcttca 381  Q
    ||||||| |||| |||||||||||| || |||||||    ||| ||||||||| ||||||||||||| |||||||||||||    
T  17349757 tttttacttcacctaatctcaattaatttaattgagagaatctaaatttaattatcacaatcaagttgaaagtaagcttca 17349837  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 388
Target Start/End: Complemental strand, 6409 - 6332
Alignment:
Q  314 taatctcaattacttcaattgaggttttctc-aatttaatt--ctcacaatcaagtttaaagtaagcttcaaggaatt 388  Q
    ||||||||||||||||||||||| || | || |||||||||  |||||||||||||| ||| ||||||| ||| ||||    
T  6409 taatctcaattacttcaattgagattctttcaaatttaatttcctcacaatcaagttgaaaataagctttaagaaatt 6332  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 375
Target Start/End: Original strand, 18371721 - 18371850
Alignment:
Q  246 ttaattgcatatgaattctttgttgaagtcatattaatttgattatgaactttcctttttacatcacttaatctcaattacttcaattgaggttttctca 345  Q
    ||||||||| |||||||  ||||||||  ||  ||||||||||| || ||||  ||||| ||   |||||||| |||||| |||||||||| || | |||    
T  18371721 ttaattgcaaatgaattacttgttgaaaacaacttaatttgattgtgcacttatctttt-actctacttaatcacaattaattcaattgagattctatca 18371819  T
Q  346 atttaa-ttctcacaatcaagtttaaagtaa 375  Q
    ||| || ||||||||||||||||| ||||||    
T  18371820 attgaaattctcacaatcaagtttcaagtaa 18371850  T

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