View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15926_low_9 (Length: 381)
Name: NF15926_low_9
Description: NF15926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15926_low_9 |
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| [»] scaffold0727 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 47900679 - 47901034
Alignment:
| Q |
19 |
ggtcaaacaaacctcgttcccgccaccaccggaacaaggtttctccggcagagagaggtgnnnnnnntgattggtgtggaagtgttgtcgaaatacgagg |
118 |
Q |
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| T |
47900679 |
ggtcaaacaaacctcgttcccgccaccaccggaacaaggtttctccggcagagagaggtgaaaaaaatgattggtgtggaagtgttgtcgaaatacgagg |
47900778 |
T |
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| Q |
119 |
aagaattagagagaagaagttaacaagaacaacgtttgttttaatgttgtggtgatgctggaataatgctatggaatttttgttgaagcttagttggatt |
218 |
Q |
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| T |
47900779 |
aagaattagagagaagaagttagcaagaacaacgtttgttttaatgttgtggtgatgctggaattatgctatggaatttttgttgaagcttagttggatt |
47900878 |
T |
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| Q |
219 |
ttgaaccgttagattgttacttgtgatggaatgttctaaacggaagattcgaatctttgcgttgttgttattttgtttgaaaattgaaagtgttagttgc |
318 |
Q |
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| T |
47900879 |
ttgaaccgttagattgttacttgtgatggaatgttctaaacggaagattcgaatctttgcgttgttgttattttgtttgaaaattgaaagtgttagttgc |
47900978 |
T |
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| Q |
319 |
tttgctgagttgtttaatcattcgtggggttccagttttgctgttgtgtccctttg |
374 |
Q |
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| T |
47900979 |
tttgctgagttgtttaatcattcgtggggttccagttttgctgttgtgtccttttg |
47901034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 23554460 - 23554415
Alignment:
| Q |
20 |
gtcaaacaaacctcgttcccgccaccaccggaacaaggtttctccg |
65 |
Q |
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| T |
23554460 |
gtcaaacaaaccttgttgccgccaccatcggaacaagatttctccg |
23554415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 6581 - 6536
Alignment:
| Q |
20 |
gtcaaacaaacctcgttcccgccaccaccggaacaaggtttctccg |
65 |
Q |
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| T |
6581 |
gtcaaacaaaccttgttgccgccaccatcggaacaagatttctccg |
6536 |
T |
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