View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_12 (Length: 506)
Name: NF15927_high_12
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 26336096 - 26335788
Alignment:
| Q |
15 |
cagagacataagcaatagaattggtgatatctgagagagtatagacannnnnnnggatgacttggttgaaggaatcaatttgggttgtcatatttggtca |
114 |
Q |
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| T |
26336096 |
cagagacataagcaatagaattggtgatatctgagagagtatagacatttttttggatgacttggttgaaggaatcaatttgggttgtcatatttggtca |
26335997 |
T |
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| Q |
115 |
tgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtga |
214 |
Q |
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| T |
26335996 |
tgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtga |
26335897 |
T |
|
| Q |
215 |
atgattggtgatctcaatcccaaatactttgctgcacaacatataagaggaagcaccattaattccaaacctatcacttttcatattaaagctagaaaag |
314 |
Q |
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| T |
26335896 |
atgattggtgatctcaatcccaaatactttgctgcacaacatataagaggaagcaccattaattccaaacctatcatttttcatattaaagctagaaaag |
26335797 |
T |
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| Q |
315 |
tagagacac |
323 |
Q |
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| T |
26335796 |
tagagacac |
26335788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 26328385 - 26328131
Alignment:
| Q |
15 |
cagagacataagcaatagaattggtgatatctgagagagtatagacannnnnnnggatgacttggttgaaggaatcaatttgggttgtcatatttggtca |
114 |
Q |
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| T |
26328385 |
cagagacataagctatagatttggtgatatctgagggagtgtatacattttcttgaatgagtttgattaaggaattgatttgtgttgtcacatttggtcc |
26328286 |
T |
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| Q |
115 |
tgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtga |
214 |
Q |
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| T |
26328285 |
tgtagaagatatttcaaatacacctgtaccaccataggcaaagttcatcccatacttcaaatcatgcttaggcactgtattagtattccataaattgtga |
26328186 |
T |
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| Q |
215 |
atgattggtgatctcaatcccaaatactttgctgcacaacatataagaggaagca |
269 |
Q |
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| T |
26328185 |
gtgattggtgatttcaatcccaaatacttggctgcacaatataaaagaggaagca |
26328131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 377 - 488
Target Start/End: Complemental strand, 26335734 - 26335623
Alignment:
| Q |
377 |
tgcactttgtagtgttctaattgataatgatgctattagagggaagggtgaattcacataccaaggaagtcagttaaaactctgccgtcggagaatcttc |
476 |
Q |
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| T |
26335734 |
tgcactttgtagtgttccaattgataatgatgctattagagggaagggtgaattcacataccaaggaagtcagttaaaactatgccgtcggagaatcttc |
26335635 |
T |
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| Q |
477 |
cggacagctttc |
488 |
Q |
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| T |
26335634 |
cggacggctttc |
26335623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 26323077 - 26322849
Alignment:
| Q |
17 |
gagacataagcaatagaattggtgatatctgagagagtatagacannnnnnnggatgacttggttgaaggaatcaatttgggttgtcatatttggtcatg |
116 |
Q |
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| T |
26323077 |
gagacataagcaatagctttgctgagatctgaaggagtatagacattttcttgaatgagttggttgaaggaatcgatttgggctgtcatatttggtcctg |
26322978 |
T |
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| Q |
117 |
aagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtgaat |
216 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||| ||||| || ||||||||| |
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| T |
26322977 |
aagtaaatgtatcaaatacacctgtgccaccatatgcaaagttcatcccatacttcaaataatgtttagacacaatgtt------cctgaatttgtgagg |
26322884 |
T |
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| Q |
217 |
gattggtgatctcaatcccaaatactttgctgcac |
251 |
Q |
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| T |
26322883 |
gattggtgatctcaatctcaaatacttggctgcac |
26322849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 26327747 - 26327685
Alignment:
| Q |
412 |
ttagagggaagggtgaattcacataccaaggaagtcagttaaaactctgccgtcggagaatct |
474 |
Q |
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| T |
26327747 |
ttagagggaagggtgaattcacataccaaggaagtcggttaaaactctaccgtcggagaatct |
26327685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 26321184 - 26321142
Alignment:
| Q |
435 |
taccaaggaagtcagttaaaactctgccgtcggagaatcttcc |
477 |
Q |
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| T |
26321184 |
taccaatgaagtcagttaaaactctaccgtccgagaatcttcc |
26321142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 42224133 - 42224184
Alignment:
| Q |
125 |
gtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaat |
176 |
Q |
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| T |
42224133 |
gtatcaaacacaccagtaccaccaaatgcaaagttcattccatatttcaaat |
42224184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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