View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15927_high_18 (Length: 455)

Name: NF15927_high_18
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15927_high_18
NF15927_high_18
[»] chr4 (1 HSPs)
chr4 (22-455)||(15501741-15502190)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 22 - 455
Target Start/End: Original strand, 15501741 - 15502190
Alignment:
Q  22 attgtggattaagtacccctccttcctttccaataaaattggccgttnnnnnnn-cattcaacataaaaacctttttaataaat----tgtaactgacct 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||||||||    ||||| ||||||    
T  15501741 attgtggattaagtacccctccctcctttccaataaaattggccgttaaaaaaaacattcaacataaaaacctttttaataaataatttgtaagtgacct 15501840  T
Q  117 tattaacatttgttttgactcaaattctattctcatt-----gatcttctcgatccaactcatctaaactttataacacccaaatttcaaggaatcaaaa 211  Q
    ||||||||||||||||||||||||||||||||||| |     ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||    
T  15501841 tattaacatttgttttgactcaaattctattctcactctggtgatctcctagaaccaactcatctaaactttataacacccaaatttcaaggaatcaaaa 15501940  T
Q  212 nnnnnnnnnnnnnnnnn--acatcaaagccccactcatatcgtgacttcaaagcaatcaataatttatacgtaccaccccttta--------acttttta 301  Q
                       ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  15501941 tttttttttctttttttttacatcaaagccccact----tcgtgacttcaaagcaatcaataatttatacgtaccacccctttatacatttaacttttta 15502036  T
Q  302 tttgtgtccttcnnnnnnnnnnnnnnnnnnctttttatttgtggtgaatatcaatctcagtatctttcataatcaataggtatgggataactttgatatt 401  Q
    ||||||||||||                  |||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |||||||||||||||    
T  15502037 tttgtgtccttcaaaacaaaaacaaaaaaactttttatttgtggcgaatatcaatctctgtatctttcataatcaatagctatgtgataactttgatatt 15502136  T
Q  402 cactcaagttataaatagagcagcatcaacggcaaaattgcaagcagcaatatg 455  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15502137 cactcaagttataaatagagcaacatcaacggcaaaattgcaagcagcaatatg 15502190  T

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